BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887947

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits t...   791    0.0  


> AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits 
to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa 
- 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes 
- 62 (source: NCBI BLink). | chr5:24473319-24474491 
REVERSE LENGTH=815
Length=815

 Score =  791 bits (428),  Expect = 0.0
 Identities = 562/625 (90%), Gaps = 15/625 (2%)
 Strand=Plus/Plus

Query  9    CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA  68
            |||| || |||||||||||||||||| ||||||||||||||||||  |||| || || ||
Sbjct  80   CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA  139

Query  69   GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT  125
            ||  |||| || | |||||||| ||||| |||||||||||||||||  | ||||| ||||
Sbjct  140  GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT  199

Query  126  TACGATGATGGATATTGTGAATAGCAATGGAATTTTAACAGATCAATTGGTTGACGAAGA  185
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct  200  TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA  259

Query  186  ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA  245
             |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  260  CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA  319

Query  246  AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA  305
            |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  320  AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA  379

Query  306  GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCATGTGCACGTTGGTA  365
            ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct  380  GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA  439

Query  366  TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCgaagaagaagaagatga  425
            |||||||||||||||||||||| ||||||||||||||||||| |  |||||||||||  |
Sbjct  440  TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTGAAGAAGAAGA--A  497

Query  426  agtagaagaaatggaagaagtagaagaggttgaagaagaagttgaagaagtaggagaagt  485
             |||| |||| | |||||| | |||||||| ||||| |  |||||||||| || |||  |
Sbjct  498  -GTAGGAGAAGTAGAAGAAATGGAAGAGGTAGAAGA-G--GTTGAAGAAGAAGTAGA--T  551

Query  486  aggagaggtagaagaagtagaagaagaacaagaagaggTCATTGATTCAGCTTCTGCAGA  545
             | | || ||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  552  -G-A-AG-TAGGAGAAGTAGAAGAAGAACAAGAAGAGGTCATAGATTCAGCTTCTGCAGA  607

Query  546  GATACCCAATGGTGAAATCCCCAATGGAGGTACTGTCTTAGAGGACACTTGTGATGTTGG  605
            |||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct  608  GATACCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGG  667

Query  606  CAAGAAACCAGATATGCCCATTTAG  630
            | ||||||||||| | |||||||||
Sbjct  668  CGAGAAACCAGATTTTCCCATTTAG  692



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30391658935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5