BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887953
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40085.1 | Symbols: | unknown protein; Has 35333 Blast hits... 316 5e-86
> AT2G40085.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16736461-16737259
REVERSE LENGTH=449
Length=449
Score = 316 bits (171), Expect = 5e-86
Identities = 204/220 (93%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAGTGATGCTGTTCCAAAACCAGTTGTTGTTGACCCTCCATTATACGACGAA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 95 ATGGAAGAGAGTGATGCTGTTCCAAAACCAGTTGTTGTTGATCCTCCATTATACGACGAA 154
Query 61 GCTCCTCCTTCGGCTTCTC-GACGCCGGCCGGTGATGATCGCCGCCGATGCAGCTCCTCC 119
||| |||| || ||||||| | ||||| |||||| |||||||||||||||||||||||||
Sbjct 155 GCTTCTCCGTCAGCTTCTCAG-CGCCGTCCGGTGGTGATCGCCGCCGATGCAGCTCCTCC 213
Query 120 AGAAGAAAATCATCTCATTCAGCGGATTCAAAGAGCTCTTGTGGAATTGCGTGAATTGAG 179
| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 214 GGCAGAAAATCATCTCATTCAAAGGATTCAAAGAGCTCTTGTGGAATTGCGCGAGTTGAG 273
Query 180 AAATCAGTTTAATGCTATTCTTAGGGAACTAGAACTCGAA 219
||||||||||||||| |||||||||||||||||| |||||
Sbjct 274 AAATCAGTTTAATGCCATTCTTAGGGAACTAGAATTCGAA 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11762653266
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5