BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887958
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47960.1 | Symbols: | Major facilitator superfamily protein... 532 8e-151
AT5G62680.1 | Symbols: | Major facilitator superfamily protein... 261 4e-69
> AT3G47960.1 | Symbols: | Major facilitator superfamily protein
| chr3:17697942-17700833 REVERSE LENGTH=2157
Length=2157
Score = 532 bits (288), Expect = 8e-151
Identities = 400/447 (89%), Gaps = 36/447 (8%)
Strand=Plus/Plus
Query 1 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGaa-c--aacaacaac 57
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 63 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGAATCATAACAACAAC 122
Query 58 -a-a-caaTAATTACACACAGATTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 114
| | |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 123 AACACCAATCATTACACACAGGTTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 182
Query 115 TCAACGACGGCGGTGAACACCTACTCCGCCGTCGATGGCGGTGGTTCTGATGGTGTGACT 174
|| || ||| | | | ||| | | |||| |||| || ||| | | |
Sbjct 183 TCTACTACGAC---G---A-CTA--AC-AC--CGAT----GTGG-TC-GAT--TCT---T 219
Query 175 TCGAAGGTCGACGACGAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 234
||| | | || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TCG-A-G--GA--A-GAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 272
Query 235 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 332
Query 295 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 392
Query 355 TTTAGTGGTACAATCAACTTCGGGACTTTTATTGCTGCTTTTCTTTGCGACACATACTTT 414
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 393 TTTAGTGGTACAATCAATTTCGGGACTTTTATTGCTGCCTTTCTTTGCGACACTTACTTT 452
Query 415 GGTCGCTACAAGACTCTCAGTGTCGCT 441
|||||||||||||||||||||||||||
Sbjct 453 GGTCGCTACAAGACTCTCAGTGTCGCT 479
> AT5G62680.1 | Symbols: | Major facilitator superfamily protein
| chr5:25165137-25167943 REVERSE LENGTH=2265
Length=2265
Score = 261 bits (141), Expect = 4e-69
Identities = 213/248 (86%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 196 AGAA-AAA-TCGTTTATAGAGGATGGAAAGTCATGCCTTTTATCATTGGTAATGAGACAT 253
|||| ||| ||||||||||||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 237 AGAAGAAAGTCGTTTATAGAGGCTGGAAAGTCATGCCCTTTATTATTGGAAATGAGACAT 296
Query 254 TTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTTGTGTACCTAACTTCTGTAT 313
||||||||||||||||||| || ||| ||||||||||||| || || ||||| | || |
Sbjct 297 TTGAGAAGCTTGGGATCATTGGAACACTATCAAACCTTCTGGTTTATTTAACTGCAGTCT 356
Query 314 TCAACCTTAAGAGCTAC-ACAGCTGCAACTATCATCAATGCCTTTAGTGGTACAATCAAC 372
||||||| ||||| || ||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct 357 TCAACCTGAAGAG-TATTACAGCTGCAACCATCATTAACGCCTTTAGTGGCACAATTAAT 415
Query 373 TTCGGGACTTTTATTGCTGCTTTTCTTTGCGACACATACTTTGGTCGCTACAAGACTCTC 432
||||| ||||| ||||||||||||| || ||||| ||||| ||||| |||||||||||
Sbjct 416 TTCGGAACTTTCGTTGCTGCTTTTCTCTGTGACACTTACTTCGGTCGATACAAGACTCTA 475
Query 433 AGTGTCGC 440
||||||||
Sbjct 476 AGTGTCGC 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5