BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887970
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10770.1 | Symbols: | Single-stranded nucleic acid binding ... 296 5e-80
> AT3G10770.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr3:3372264-3374271 REVERSE LENGTH=1444
Length=1444
Score = 296 bits (160), Expect = 5e-80
Identities = 189/203 (93%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGCGGATCCTGTTT-TGGTCGAGGCACTTCA 59
|||||| |||||||||||||||||||||||| ||||||| ||| |||||||||| |||||
Sbjct 246 ATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATCCT-TTTCTGGTCGAGGCTCTTCA 304
Query 60 GAATCCTCGTCATCGTCTCACCATTTCGCGGATGGAGCTTGATAGACAGAAGTTCTTTCA 119
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 305 AAATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGCTTGATATACAGAAGTTCTTTCA 364
Query 120 AAACCTTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTCCAACATCGTACATGCGTGTTCC 179
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 365 AAACCCTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTCCAACATCGTACCTGCGTCTTGC 424
Query 180 TGCACATCAAGTTGCTCAGCATT 202
|||||||| ||||||||||||||
Sbjct 425 TGCACATCGAGTTGCTCAGCATT 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9406352637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5