BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887971

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07380.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   381    2e-105


> AT5G07380.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: egg 
cell; Has 84 Blast hits to 81 proteins in 31 species: Archae 
- 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 41; 
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2332527-2336061 
FORWARD LENGTH=2153
Length=2153

 Score =  381 bits (206),  Expect = 2e-105
 Identities = 243/261 (93%), Gaps = 2/261 (1%)
 Strand=Plus/Plus

Query  103  CAAGCAGATAAATGTGTGTCAGTTGAGTTTCTTCTGTTTGAGGAGCAAGCAAGCTCTCTG  162
            ||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||
Sbjct  446  CAA-CAGATAAATGTGTGTCAGTTGAGTTTCTTTTGTTTGAGAAGCAAGAAAGCTATCTG  504

Query  163  AGCTATACGCAGGAGAAGATTAATAGATTCCTCAGATGCTTATCGGATCTTGACAAGTGT  222
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  505  AGCTATACGCAGGAGAAGATTAATAGATTCCTCAGATGTTTATCGGATCTTGACAATTGT  564

Query  223  TCATTTCAAACATGTATCCATGATGGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTT  282
            ||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  565  TCATTTCAAACCTGCATCCCTGATGGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTT  624

Query  283  CAGGAGCTCAAGGACGACTCTGGAGAATCACTGCAGGCTCAGATTATCTTCATGAGTAAC  342
            |||||||| ||||| ||| |||||||||||||||||||||||||||||||||  ||||||
Sbjct  625  CAGGAGCTAAAGGATGACACTGGAGAATCACTGCAGGCTCAGATTATCTTCAAAAGTAAC  684

Query  343  ATAGTTGGTTCAGTGAAATAA  363
             | ||||||||||| ||||||
Sbjct  685  CTTGTTGGTTCAGT-AAATAA  704



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5