BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887974

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding fam...   148    1e-35


> AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding family 
protein | chr5:25910279-25912896 FORWARD LENGTH=1857
Length=1857

 Score =  148 bits (80),  Expect = 1e-35
 Identities = 88/92 (96%), Gaps = 0/92 (0%)
 Strand=Plus/Plus

Query  1    GTTGGAAAAACATCACTTGTACCCCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCT  60
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  654  GTTGGAAAAACATCACTTGTACACCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCT  713

Query  61   CAAACAATTGGATGCACAGTAGGTGTCAAGCA  92
            ||||| ||||||||||| || |||||||||||
Sbjct  714  CAAACGATTGGATGCACTGTTGGTGTCAAGCA  745



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8500928319


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5