BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887975
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43285.1 | Symbols: | Putative membrane lipoprotein | chr5:... 244 2e-64
AT5G43513.1 | Symbols: | Putative membrane lipoprotein | chr5:... 213 7e-55
AT5G43510.2 | Symbols: | Putative membrane lipoprotein | chr5:... 211 2e-54
AT5G43525.1 | Symbols: | Putative membrane lipoprotein | chr5:... 211 2e-54
AT5G43516.1 | Symbols: | pseudogene of a defensin-like (DEFL) ... 202 1e-51
AT5G43518.1 | Symbols: | Putative membrane lipoprotein | chr5:... 200 5e-51
> AT5G43285.1 | Symbols: | Putative membrane lipoprotein | chr5:17370475-17370857
REVERSE LENGTH=285
Length=285
Score = 244 bits (132), Expect = 2e-64
Identities = 234/280 (84%), Gaps = 20/280 (7%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACTTTTCTATTTTTCACTCTTTTAATTTTTGTTTCTTCATGTGCATCAATA 60
|||||||||| |||| ||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 1 ATGAAGTTGATTTTTATATTTTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAATA 60
Query 61 CTTATAAAGGAATCTAGTGGAGAAGAGACAGCT-TATTATTTCAAT-CAGGCAGCAAGTC 118
||||||||||||||||||| |||||||| | | ||| ||||||| || | ||||||||
Sbjct 61 CTTATAAAGGAATCTAGTGAAGAAGAGAGA-ATATATCCTTTCAATCCA-GTAGCAAGTC 118
Query 119 CTTTCGATCCATATTCATTGAACCAGAA-ACTTAAACAATATTGG----ATTGGTTATTG 173
||||||||||| |||| ||||||| || |||| || |||| || |||||||||||
Sbjct 119 CTTTCGATCCACGTTCACTGAACCA-AATACTT-AA-AATA--GGCAAAATTGGTTATTG 173
Query 174 TTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAA-TATATTAAG-AGATGTAATTTG 231
||||||||||||||||||||||||||||| | || | |||||| | | ||||| |||
Sbjct 174 TTTTGATTGCGCAAGAGCTTGTATGAGAA-GAGATAGGTATATTC-GCACATGTAGTTTT 231
Query 232 GAAAGACGTCTTTGTCGTTGCAGT-ATTAGTAAGATTCAT 270
|||||| ||||||||||||||| || ||| | ||||||
Sbjct 232 GAAAGAAAACTTTGTCGTTGCAGTTAT-AGTCATATTCAT 270
> AT5G43513.1 | Symbols: | Putative membrane lipoprotein | chr5:17477999-17478390
FORWARD LENGTH=297
Length=297
Score = 213 bits (115), Expect = 7e-55
Identities = 223/272 (82%), Gaps = 19/272 (7%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACTTTTCTATT-TT--TCACTCTTTTAATTTTTGTTTCTTCATGTGCATCA 57
||||||||| ||||| |||| || | ||||| ||||||||||||||||||||| |||||
Sbjct 22 ATGAAGTTGCCTTTTATATTCTTAATTACTCTATTAATTTTTGTTTCTTCATGTACATCA 81
Query 58 ATACTTATAAAGGAATCTAGTGGA-GAAGAGACAGCTTATTATTTCAAT-CAGGCAGCAA 115
||||||||||| ||||||||| || ||||||| | | |||| ||||| | || || |||
Sbjct 82 ATACTTATAAATGAATCTAGT-GATGAAGAGAGAACATATTCTTTCAGTCCA-ACAACAA 139
Query 116 GTCCTTTCGATCCATATTCA-TTGAACC-AGAAACTTAAACAATAT-TG-G-ATTGGTTA 170
||||||| |||||| ||| || |||| || ||||| || ||| | | | ||||||||
Sbjct 140 GTCCTTTTGATCCACGCTCACTT-AACCAAG-AACTT-AA-AAT-TGGGAGAATTGGTTA 194
Query 171 TTGTTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAATATATTAAG-AGATGTAATT 229
|||||||||||||||||||||||||||||| ||| || |||||| | | ||||| ||
Sbjct 195 CTGTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTC-GTACATGTAGTT 253
Query 230 TGGAAAGACGTCTTTGTCGTTGCAGTATTAGT 261
| |||||| |||||||||||||||||||||
Sbjct 254 TTGAAAGAAAACTTTGTCGTTGCAGTATTAGT 285
> AT5G43510.2 | Symbols: | Putative membrane lipoprotein | chr5:17474111-17474478
FORWARD LENGTH=273
Length=273
Score = 211 bits (114), Expect = 2e-54
Identities = 220/269 (82%), Gaps = 16/269 (6%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACTTTTCTATTTTTCACTCTTTTAATTTTTGTTTCTTCATGTGCATCAATA 60
||||||||| || || |||| || ||||| ||||||||||||||||||||| |||||| |
Sbjct 1 ATGAAGTTGCCTATTATATTCTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAACA 60
Query 61 CTTATAAA-GGAATCTAGTGGA-GAAGAGACAGCTTATTATTTCAAT-CAGGCAGCAAGT 117
|||||||| || ||||||| || ||||||| | | |||| ||||| | || || |||||
Sbjct 61 CTTATAAATGG-ATCTAGT-GATGAAGAGAGAACATATTCTTTCAGTCCA-ACAACAAGT 117
Query 118 CCTTTCGATCCATATTCATTGAACC-AGAAACTTAAACAATAT-TG-G-ATTGGTTATTG 173
||||| |||||| ||| |||||| || ||||| || ||| | | | |||||||| ||
Sbjct 118 CCTTTTGATCCACGCTCACTGAACCAAG-AACTT-AA-AAT-TGGGAGAATTGGTTACTG 173
Query 174 TTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAATATATTAAG-AGATGTAATTTGG 232
|||||||||||||||||||||||||||| ||| || |||||| | | ||||| ||| |
Sbjct 174 TTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTC-GTACATGTAGTTTTG 232
Query 233 AAAGACGTCTTTGTCGTTGCAGTATTAGT 261
||||| |||||||||||||||||||||
Sbjct 233 AAAGAAAACTTTGTCGTTGCAGTATTAGT 261
> AT5G43525.1 | Symbols: | Putative membrane lipoprotein | chr5:17488149-17488516
FORWARD LENGTH=273
Length=273
Score = 211 bits (114), Expect = 2e-54
Identities = 220/269 (82%), Gaps = 16/269 (6%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACTTTTCTATTTTTCACTCTTTTAATTTTTGTTTCTTCATGTGCATCAATA 60
||||||||| || || |||| || ||||| ||||||||||||||||||||| ||||| ||
Sbjct 1 ATGAAGTTGCCTATTATATTCTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAGTA 60
Query 61 CTTATAAA-GGAATCTAGTGGA-GAAGAGACAGCTTATTATTTCAAT-CAGGCAGCAAGT 117
|||||||| || ||||||| || ||||||| | | |||| ||||| | || | |||||||
Sbjct 61 CTTATAAATGG-ATCTAGT-GATGAAGAGAGAACATATTCTTTCAGTCCAAG-AGCAAGT 117
Query 118 CCTTTCGATCCATATTCATTGAACC-AGAAACTTAAACAATAT-TG-G-ATTGGTTATTG 173
||||| |||||| ||| |||||| || ||||| || ||| | | | |||||||| ||
Sbjct 118 CCTTTTGATCCACGCTCACTGAACCAAG-AACTT-AA-AAT-TGGGAGAATTGGTTACTG 173
Query 174 TTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAATATATTAAG-AGATGTAATTTGG 232
|||||||||||||||||||||||||||| ||| || |||||| | | ||||| ||| |
Sbjct 174 TTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTC-GTACATGTAGTTTTG 232
Query 233 AAAGACGTCTTTGTCGTTGCAGTATTAGT 261
||||| |||||||||| ||||||||||
Sbjct 233 AAAGAAAACTTTGTCGTTACAGTATTAGT 261
> AT5G43516.1 | Symbols: | pseudogene of a defensin-like (DEFL)
family protein. | chr5:17482275-17482644 FORWARD LENGTH=275
Length=275
Score = 202 bits (109), Expect = 1e-51
Identities = 221/272 (81%), Gaps = 20/272 (7%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACTTTTCTATT-TT--TCACTCTTTTAATTTTTGTTTCTTCATGTGCATCA 57
||||||||| ||||| ||| || | ||||| ||||||||||||||||||||| |||||
Sbjct 1 ATGAAGTTGCCTTTT-AATTCTTAATTACTCTATTAATTTTTGTTTCTTCATGTACATCA 59
Query 58 ATACTTATAAAGGAATCTAGTGGA-GAAGAGACAGCT-TATTATTTCAAT-CAGGCAGCA 114
||||||||||| ||||||||| || ||| ||| | | |||| ||||| | || || ||
Sbjct 60 ATACTTATAAATGAATCTAGT-GATGAACAGAGA-ATATATTCTTTCAGTCCA-ACAACA 116
Query 115 AGTCCTTTCGATCCATATTCATTGAACC-AGAAACTTAAACAATAT-TG-G-ATTGGTTA 170
|||||||| |||||| ||| |||||| || ||||| || ||| | | | ||||||||
Sbjct 117 AGTCCTTTTGATCCACGCTCACTGAACCAAG-AACTT-AA-AAT-TGGGAGAATTGGTTA 172
Query 171 TTGTTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAATATATTAAG-AGATGTAATT 229
|||||||||||||||||||||||||||||| ||| || |||||| | | ||||| ||
Sbjct 173 CTGTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTC-GTACATGTAGTT 231
Query 230 TGGAAAGACGTCTTTGTCGTTGCAGTATTAGT 261
| |||||| |||||||||||||||||||||
Sbjct 232 TCGAAAGAAAACTTTGTCGTTGCAGTATTAGT 263
> AT5G43518.1 | Symbols: | Putative membrane lipoprotein | chr5:17484366-17484852
FORWARD LENGTH=392
Length=392
Score = 200 bits (108), Expect = 5e-51
Identities = 211/258 (82%), Gaps = 18/258 (7%)
Strand=Plus/Plus
Query 14 TTCTAT-TT-TTCACTCTTTTAATTTTTGTTTCTTCATGTGCATCAATACTTATAAAGGA 71
|||||| || || ||||| ||||||||||||||||||||| |||||||||||||||| ||
Sbjct 80 TTCTATATTCTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAATACTTATAAATGA 139
Query 72 ATCTAGTGGA-GAAGAGACAGCT-TATTATTTCAAT-CAGGCAGCAAGTCCTTTCGATCC 128
||||||| || ||| ||| | | |||| ||||| | || || |||||||||| |||||
Sbjct 140 ATCTAGT-GATGAACAGAGA-ATATATTCTTTCAGTCCA-ACAACAAGTCCTTTTGATCC 196
Query 129 ATATTCATTGAACC-AGAAACTTAAACAATAT-TG-G-ATTGGTTATTGTTTTGATTGCG 184
| ||| |||||| || ||||| || ||| | | | |||||||| |||||||||||||
Sbjct 197 ACGCTCACTGAACCAAG-AACTT-AA-AAT-TGGGAGAATTGGTTACTGTTTTGATTGCG 252
Query 185 CAAGAGCTTGTATGAGAAAGGGAAAATATATTAAG-AGATGTAATTTGGAAAGACGTCTT 243
||||||||||||||||| ||| || |||||| | | ||||| ||| |||||| |||
Sbjct 253 CAAGAGCTTGTATGAGACGGGGTAAGTATATTC-GTACATGTAGTTTTGAAAGAAAACTT 311
Query 244 TGTCGTTGCAGTATTAGT 261
||||||||||||||||||
Sbjct 312 TGTCGTTGCAGTATTAGT 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5