BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887977
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1707 0.0
> AT5G59960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24142014-24145333
REVERSE LENGTH=1611
Length=1611
Score = 1707 bits (924), Expect = 0.0
Identities = 1037/1090 (95%), Gaps = 13/1090 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAAGTTTCATCGCCGtcttcttcttcttcttcttcttcACGGAGGTCTGCTTAT 60
|||||||||||||| |||||| ||||| | || | || |||||||||||||||||||
Sbjct 194 ATGGAGAAAGTTTCGTCGCCG---TCTTC--C-TC-T-TT-TTCACGGAGGTCTGCTTAT 244
Query 61 CTTGAAGCTCTTACACAGGAGATTAAGAAGAAGCTTACTCGGGCTGTTGTCTCTCCAGCA 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 245 CTTGAAGCTCTTACACAAGAGATTAAGAAGAAGCTTACACGGGCTGTTGTCTCTCCAGCA 304
Query 121 CAAACACGCAACTTGTTGCAAGACTTATTTGCTGATATAGCTCTCGAAGTCGACGAAAGA 180
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 305 CAAACACGCAACTTGTTACAAGACTTATTTGCTGATATAGCTCTCGAAGTAGACGATCGA 364
Query 181 GCGAAAGATGTGATCCTTAGCAAAGAAGAGGATGTGATTTCTTCTGTTGAAGCAGATG-T 239
|| |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
Sbjct 365 GCCAAAGATGTGATCCTTAGCAAAGAAGAGGATTTGATTACTTCTGATGAAGCAGATGCT 424
Query 240 AGATGGTCCATTATGCTTTTTCGATGTCCTTGCTGATTATTATGTGAAAGTGTCTGAGAG 299
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 425 -GATGGTCCGTTATGCTTTTTCGATGTCCTTGCTGATTACTATGTGAAAGTGTCTGAGAG 483
Query 300 GGGAAAAGATATACTTGATTTAATGGTGCAGCTCTGGAGCCAGTCCTTTGCATCACATAT 359
||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 484 GGGGAAGGATATACTTGATTTGATGGTGCAGCTGTGGAGCCAGTCCTTTGCATCACATAT 543
Query 360 ATTCTCTCTACTGTTTCATAAATGGCTGTTTGAGGTTGAGCTTGAGAATCAAGAAATACT 419
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 544 ATTCTCTCTACTGTTCCATAAATGGCTGTTTGAGGTTGAGCTTGACAATCAAGAAATACT 603
Query 420 CCTGCGCTATTCTTCAGCTCTGGTGCAGGGAGCAACAAATGTGTTCTGGATAGACATCCA 479
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CCTGCGATATTCTTCGGCTCTGGTGCAGGGAGCAACAAATGTGTTCTGGATAGACATCCA 663
Query 480 GACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATCTTCTTGAGGAAGTTGCTTTGGA 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 664 GACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATCTCCTTGAGGAAGTTGCTTTGGA 723
Query 540 GCAGATGCGATTGaaaaaaaTTCCCATTCAGGCACAGAGGGAACTGTATCTCTTACTCTC 599
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 724 GCAGATACGATTGAAAAAAATTCCCATTCAGGCTCAGAGGGAACTGTATCTCTTACTCTC 783
Query 600 TAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCGATAGCTTCTTGAGGAACTTCCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCGATAGCTTCTTGAGGAACTTCCC 843
Query 660 AGAGTTTCCAAATGCTTTCTTGATTGGAGGACCCGGAGATTTCCTTGTTATTGAACTAAC 719
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 844 AGAGTTTCCAAATGCTTTCTTGATTGGAGGACCTGGAGATTTCCTTGTTATCGAACTAAC 903
Query 720 GGATCAGCTGCAAAAACTGAAGGTGGAACCAGTACTGCTACATTATCTTTCTCAGATGAA 779
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 904 TGATCAGCTGCAAAAACTGAAGGTGGAACCAGTGCTGCTACATTATCTTTCTCAGATGAA 963
Query 780 GATTCTTCAAGGTATGGAACTGAGAATGACCACTAGCACAAGGTTAAAGGCGTGTTTATA 839
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 964 GATTCTTCAAGGTATGGAACTGAGAATGACTACTAGCACAAGGTTAAAGGCGTGTTTATA 1023
Query 840 CAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAAGAGCCGTCCGTCATGCAGCCTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAAGAGCCGTCCGTCATGCAGCCTG 1083
Query 900 GGATGCTTTGGATTCCCTCTTTCCTGTGGGGCGTTACCCAAGGCATCTCATTAGTCTATT 959
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1084 GGATGCTTTGGATTCCCTCTTTCCTGTTGGGCGTTACCCGAGGCATCTCATTAGTCTATT 1143
Query 960 TTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCATGCTGGAACTTTGTGGTT-CTTG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1144 TTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCATGCTGGAACTTTGTGGTTTCTTG 1203
Query 1019 CATCAACGACGCTATTATATTCTATCGTAAGGCTCATCTTTTCACGGAGAGTTAACCCAA 1078
||| || | || || | |||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1204 CATTAAGG-CGGTACTCTATTCTATCGTAAGGCTCATCTTTTCACGGCGAGAAAAGCCAA 1262
Query 1079 GGCAGAGCTG 1088
||||||||||
Sbjct 1263 GGCAGAGCTG 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5