BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887980
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38350.1 | Symbols: | Disease resistance protein (NBS-LRR c... 281 4e-75
AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-L... 248 4e-65
AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 222 3e-57
AT4G36140.1 | Symbols: | disease resistance protein (TIR-NBS-L... 187 9e-47
> AT5G38350.1 | Symbols: | Disease resistance protein (NBS-LRR
class) family | chr5:15328659-15331528 FORWARD LENGTH=2502
Length=2502
Score = 281 bits (152), Expect = 4e-75
Identities = 350/442 (79%), Gaps = 28/442 (6%)
Strand=Plus/Plus
Query 137 TCAACCAAAAAGATAT-CATGGTTCCTAATTTAGGAGTCGCACAAGAAAGGTTGAAAGAC 195
||||||| || ||||| | | ||| | |||||||||| ||||| || |||||||| |||
Sbjct 335 TCAACCACAAGGATATGGA-GCTTCATCATTTAGGAGTTGCACAGGATAGGTTGAACGAC 393
Query 196 AAGGAAA-TATTTCTCGTTCTTGATGATG--TTGATCGGTTAGA-ACAACTGGATGCCT- 250
|| |||| | || | ||||| ||| | | |||||| || | | |||||| |||| ||
Sbjct 394 AA-GAAAGTGCTTATTGTTCTCGAT-A-GCATTGATCAGTCA-ATACAACTAGATG-CTA 448
Query 251 TGGCAAAAGAAACTCGGTGGTTTGGTCC-TCGAAGTCGGATTATCATCACAACACAAGAT 309
| ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 449 TTGCAAAAGAAACTCGGTGGTTTGG-CCATGGAAGTCGGATTATCATCACAACACAAGAC 507
Query 310 CTAAGAGTTTTAGA-GGCACATGGGATCAACCATATTTATAAAGTGGATTTTCCATCAAC 368
| || | |||| || ||||||||| |||||||||||||| || ||||| ||||||||| |
Sbjct 508 CAAAAACTTTT-GAAGGCACATGGAATCAACCATATTTACAAGGTGGAGTTTCCATCAGC 566
Query 369 -TCATGAGGCTTTTCAAATGGTCTGTATATATGCTTTTGGTCAGAAGAACCCTGAAT-AT 426
| |||| |||| ||| ||| | ||||| ||||||||||| || || |||| ||| ||
Sbjct 567 AT-ATGAAGCTTATCAGATGTTTTGTATGTATGCTTTTGGCCAAAACTTCCCT-AATGAT 624
Query 427 GATTTCACAGAA-CTTGTTTGGGAAGTTGCAAATCTTGCTAG-TCAACTTCCTCTAGGAC 484
| |||| || | |||| |||||||||| |||| ||| ||| ||| || ||| | ||||
Sbjct 625 GGTTTCG-AGGAGCTTGCTTGGGAAGTTACAAAACTTT-TAGGTCATCTACCTTTGGGAC 682
Query 485 TAA-AGGTTATGGGCTCCCACTTCAAGAGAAAA-TCCAAGCAAGAGTGGAAAAATGCTCT 542
||| || ||||||| ||||||||| ||| || || | ||| |||||| ||||||| |
Sbjct 683 TAAGAG-TTATGGGTTCCCACTTCC-GAGGAATGTCTAGGCATGAGTGGGTAAATGCTTT 740
Query 543 ACCAAGTTTGAAGAATCGCCTT 564
|||||| || |||| |||||||
Sbjct 741 ACCAAGGTTAAAGATTCGCCTT 762
> AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr3:9260838-9268797 REVERSE LENGTH=5946
Length=5946
Score = 248 bits (134), Expect = 4e-65
Identities = 344/442 (78%), Gaps = 28/442 (6%)
Strand=Plus/Plus
Query 137 TCAACCAAAAAGATATC-ATGGTTCCTAATTTAGGAGTCGCACAAGAA-AGGTTGAAAGA 194
||||||| | ||| || | ||||||| |||||||||| | | || || |||||||| ||
Sbjct 4532 TCAACCATATGGATGTCGA-GGTTCCTCATTTAGGAGTTGTAGAA-AATAGGTTGAATGA 4589
Query 195 CAAGGAAA-TATTTCTCGTTCTTGATGATGTTGATCGGTTAGA-ACAACTGGATGCCT-T 251
||| ||| || || | ||||| ||| | | |||| || | | ||||| |||| || |
Sbjct 4590 CAA-AAAAGTACTTATTGTTCTAGATAACATCGATCAGTCA-ATGCAACTAGATG-CTAT 4646
Query 252 GGCAAAAGAAACTCGGTGGTTTGGTCCTCGAAGTCGGATTATCATCACAACACAAGATCT 311
|||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |
Sbjct 4647 CGCAAAAGAAACTCGGTGGTTCGGTCATGGAAGTCGGATTATCATCACAACACAAGACCA 4706
Query 312 AAGAGTTTTAGA-GGCACATGGGATCAACCATATTTATAAAGTGGATTTTCCATCAACTC 370
|| | |||| || ||||||||| |||||||||||||| || ||||||| ||| ||||| |
Sbjct 4707 AAAACTTTT-GAAGGCACATGGCATCAACCATATTTACAAGGTGGATTATCCGTCAACAC 4765
Query 371 ATGAGGCTTTTCAAATGGTCTGTATATATGCTTTTGGTCAGAAGAACCCTGAATATGA-T 429
|||| |||| ||||| | ||||| | |||| ||||| | ||| |||| || |||| |
Sbjct 4766 ATGAAGCTTGCCAAATCTTTTGTATGTCTGCTGTTGGTAAAAAGTTCCCTAAAGATGAGT 4825
Query 430 TTCACAGAACTTGT-TTGGGAAGTTGCAAATCTTGCTAG-TCAACTT-CC-TCTAGGACT 485
|||| |||||||| |||| |||| |||||||| ||| | ||| | || | | |||||
Sbjct 4826 TTCA-AGAACTTGCATTGG-AAGTCACAAATCTTT-TAGGT-AACCTACCAT-TGGGACT 4880
Query 486 AA-AGGTTATGGGCTCCCACTT-CAAGAGAAAATCCAAGCAAGAGTGGAAAAATGCTCTA 543
|| || |||||||||| || || | | ||| || ||||| ||||||| |||||| |||
Sbjct 4881 AAGAG-TTATGGGCTCTCATTTTCGGG-GAATGTCTAAGCAGGAGTGGATAAATGCACTA 4938
Query 544 CCAAGTTTGAAGAA-TCGCCTT 564
||||| || ||| | || ||||
Sbjct 4939 CCAAGGTT-AAGGACTCACCTT 4959
> AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:24494678-24498542 FORWARD LENGTH=3269
Length=3269
Score = 222 bits (120), Expect = 3e-57
Identities = 343/446 (77%), Gaps = 33/446 (7%)
Strand=Plus/Plus
Query 137 TCAACCAAAAAGATATC-ATGGTTCCTAATTTAGGAGTCGCACAAGAAAGGTTGAAAGAC 195
||||||| ||||||||| | | ||||| | ||||||| | | |||| || |||||||||
Sbjct 982 TCAACCACAAAGATATCGA-GATTCCTCACCTAGGAGTTGTAGAAGATAGATTGAAAGAC 1040
Query 196 AAGGAAA-TATTTCTCGTTCTTGATGATGTTGATCGGTTAGA-ACAACTGGATGCCT-TG 252
|| |||| | ||| | ||||||||| || | || | || | | |||||| |||| || |
Sbjct 1041 AA-GAAAGTGTTTATTGTTCTTGATAATATCGACCAGTCA-ATACAACTAGATG-CTATT 1097
Query 253 GCAAAAGAAACTCGGTGGTTTGGTCCTCGAAGTCGGATTATCATCACAACACAAGATCT- 311
|||||||||| ||| |||||||||| | |||||||||||||||||||||||||||| |
Sbjct 1098 GCAAAAGAAAGTCGATGGTTTGGTCATGGAAGTCGGATTATCATCACAACACAAGACCGG 1157
Query 312 AAGAGTTTTAGA-GGCACATG--GG-ATCAACCATATTTATAAAGTGGATTTTCCATCAA 367
|| | |||| || |||||||| || |||||||||||||| || || |||||||||||
Sbjct 1158 AA-ACTTTT-GAAGGCACATGATGGCATCAACCATATTTACAACGTAAATTTTCCATCAG 1215
Query 368 C-TCATGAGGCTTTTCAAATGGTCTGTATATATGCTTTTGGTCAGAAGAAC--CCTGAAT 424
| | |||| |||| ||||| | ||||| ||||||||||| || || || ||| ||
Sbjct 1216 CAT-ATGAAGCTTGCCAAATATTTTGTATGTATGCTTTTGGACA-AA-AATTTCCTAAAG 1272
Query 425 ATGATTTC-ACAGAACTTGTTTGGGAAGTTGCAAATCTTGCTAG-TCAACTTCC-TCTAG 481
||| |||| | ||| |||| |||||||||||||| ||| ||| | ||| || | | |
Sbjct 1273 ATGGTTTCGA-AGAGCTTGCATGGGAAGTTGCAAAACTTT-TAGGTGGACTACCAT-TGG 1329
Query 482 GACTAA-AGGTTATGGGCTCCCACTT-CAAGAGAAAATCCAAGCAAGAGTGGAAAAATGC 539
| ||| || |||||||||| || || | | ||| || || || ||||||| ||||||
Sbjct 1330 GTTTAAGAG-TTATGGGCTCTCATTTTCGGG-GAATGTCTAAACATGAGTGGATAAATGC 1387
Query 540 TCTACCAAGTTTGAAGAA-TCGCCTT 564
||||| || || ||| | |||||||
Sbjct 1388 CCTACCGAGGTT-AAGGACTCGCCTT 1412
> AT4G36140.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr4:17098956-17104479 REVERSE LENGTH=4824
Length=4824
Score = 187 bits (101), Expect = 9e-47
Identities = 163/192 (85%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 175 GCACAAGAAAGGTTGAAAGACAAGGAAA-TATTTCTCGTTCTTGATGATGTTGATC-GGT 232
||||| |||| |||||||||||| |||| | | || |||||||||||||| || | |
Sbjct 1099 GCACATGAAATGTTGAAAGACAA-GAAAGTGGTACTTGTTCTTGATGATGTGGA-CAGCA 1156
Query 233 TAGAACAACTGGATGCCTTGGCAAAAGAAACTCGGTGGTTTGGTCCTCGAAGTCGGATTA 292
||| |||| | |||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 1157 TAGGACAATTAGATGCCTTGGCAAACGAAGCTCGGTGGTTTGGTCCTGGAAGTCGGATTA 1216
Query 293 TCATCACAACACAAGATCTAAGAGTTTTAGAGGCACATGGGATCAACCATATTTATA-AA 351
|||||||||||||||||| |||| ||||||||| ||| |||||| | |||| |||| ||
Sbjct 1217 TCATCACAACACAAGATCAAAGACTTTTAGAGGAACAAGGGATCCA--ATATATATACAA 1274
Query 352 -GTGGATTTTCC 362
|||||||||||
Sbjct 1275 CGTGGATTTTCC 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5