BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887987

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36922.1 | Symbols:  | unknown protein. | chr1:13984576-1398...   124    3e-28


> AT1G36922.1 | Symbols:  | unknown protein. | chr1:13984576-13985290 
FORWARD LENGTH=503
Length=503

 Score =  124 bits (67),  Expect = 3e-28
 Identities = 73/76 (96%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  1    AATGCTATTGAACAAGAAATAATCACTGTCTCTGGAAATTCAGTGGGGACTTCAATCGGG  60
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  227  AATGATATTGAACAAGAAATAATCACTGTCTCTGGAAATTCAGTGGGGACTTCAATCGGG  286

Query  61   ACCTCAACTCAAGTTG  76
            ||| ||||||| ||||
Sbjct  287  ACCACAACTCAGGTTG  302



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11461046772


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5