BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888000

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24120.2 | Symbols:  | Homeodomain-like superfamily protein ...   132    2e-30
  AT4G13640.2 | Symbols: UNE16 | Homeodomain-like superfamily pro...  99.0    2e-20


> AT3G24120.2 | Symbols:  | Homeodomain-like superfamily protein 
| chr3:8705636-8708315 REVERSE LENGTH=1353
Length=1353

 Score =  132 bits (71),  Expect = 2e-30
 Identities = 107/122 (88%), Gaps = 11/122 (9%)
 Strand=Plus/Plus

Query  51   gggTTACCAAGTCACTGGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACG  110
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct  575  GGGTTACCAAGTCAC-CGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACG  633

Query  111  AGCAATTGGAG-ATG--CA-----A-CGGAGACTCCAGCTAAGGATAGAGGCACAAG-AA  160
            | ||||||||| |||  ||     | ||||| |||||||| |||||||||||||||| ||
Sbjct  634  ATCAATTGGAGTATGGGCAGGTGCAACGGAGGCTCCAGCTGAGGATAGAGGCACAAGGAA  693

Query  161  AA  162
            ||
Sbjct  694  AA  695


> AT4G13640.2 | Symbols: UNE16 | Homeodomain-like superfamily protein 
| chr4:7936606-7938645 REVERSE LENGTH=1294
Length=1294

 Score = 99.0 bits (53),  Expect = 2e-20
 Identities = 96/115 (83%), Gaps = 10/115 (9%)
 Strand=Plus/Plus

Query  53   GTTACCAAGTCACTGGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACGAG  112
            ||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct  546  GTTACCAGGTCACT-GAAGCTTTGCGTGCCCAGATGGAAGTCCAAAGAAGACTACACGAG  604

Query  113  CAATT-G-G-A---G-A--TGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAG  158
            ||| | | | |   | |  ||||| || |||||||| ||||||| ||||||||||
Sbjct  605  CAACTAGAGTATACGCAGGTGCAAAGGCGACTCCAGTTAAGGATCGAGGCACAAG  659



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14024701971


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5