BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888006

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51590.1 | Symbols:  | AT hook motif DNA-binding family prot...   237    3e-62


> AT5G51590.1 | Symbols:  | AT hook motif DNA-binding family protein 
| chr5:20956567-20959113 REVERSE LENGTH=1740
Length=1740

 Score =  237 bits (128),  Expect = 3e-62
 Identities = 161/176 (91%), Gaps = 5/176 (3%)
 Strand=Plus/Minus

Query  8     AACAACTCAAGATT-ATGACTGATCA-ATGTCGGATTCTTTCCATCGATCATCAGCTTGG  65
             |||||||||||||| || ||  || | |||||||||||||||||||||||||||||||||
Sbjct  1494  AACAACTCAAGATTCATAACACAT-ATATGTCGGATTCTTTCCATCGATCATCAGCTTGG  1436

Query  66    AACCTCGGTGTCAGATTCGCTATGGCCTCCAAAttcttcatcatcttcaccttctaaatc  125
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1435  AACCTCGGTGTCAGATTCGCTATGGCCTCCGAATTCTTCATCATCTTCACCTTCTAAATC  1376

Query  126   ctcttcatcttcttcc-tcatcttcttctGGGAGGGGTGAGAAGAGATCCTTGATA  180
              || |||||||||||| | ||||||| | |||||||  ||||||||||||||||||
Sbjct  1375  ATCCTCATCTTCTTCCCT-ATCTTCTCCAGGGAGGGAAGAGAAGAGATCCTTGATA  1321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5