BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888008
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51580.1 | Symbols: | unknown protein; Has 8 Blast hits to ... 566 1e-160
> AT5G51580.1 | Symbols: | unknown protein; Has 8 Blast hits to
6 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa
- 2; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink). | chr5:20952442-20953393 REVERSE LENGTH=952
Length=952
Score = 566 bits (306), Expect = 1e-160
Identities = 460/532 (86%), Gaps = 20/532 (4%)
Strand=Plus/Plus
Query 307 GATTTCTCAAAACCGGTTTTGGATGAGATAGTC-GACTCAGAAATC-ATCACGAAGTTCT 364
|||||||||||||||| |||||| ||| | | | || || || | | | || ||||
Sbjct 431 GATTTCTCAAAACCGGGTTTGGACAAGAGAACCGGTTTC-GATTTCAAAC-CCAATTTCT 488
Query 365 CAAAACCGGGTTTGGA-AGAGAGAGCCGGC-TCGGAATTCAACAAGGTTTTCTTAGAACC 422
|||||||||||||||| | ||||| ||||| | ||| |||||| || ||||| | || |
Sbjct 489 CAAAACCGGGTTTGGACA-AGAGAACCGGCAT-AGAAGTCAACAGGGATTTCTCAAAATC 546
Query 423 GGGTTTGGAAGAGAGAGCCGACTCAGAAGTCAACAAGGTTTTCTTAAAACCGGGTTTGGA 482
|||||||||||||| || |||||| ||| || || ||| |||| |||||||||||| ||
Sbjct 547 GGGTTTGGAAGAGATAGTCGACTCTGAAATCCTCACGGTATTCTCAAAACCGGGTTTAGA 606
Query 483 --AGAGATAGTC-GACTCAGAAATCATCATGGAATTCTCAAAACCGGATTTAGAGGAGAG 539
|||| | | || ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 607 TTGGAGA-A--CAGAGTCAGATATCATCATGGAATTCTCAAAACCGGGTTTAGAGGAGAG 663
Query 540 AACCGAGTCAGAAAACATCACGGGTTTCTGCAAACCGGGATTTGATTTGTCTTGGGAACC 599
||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 664 AACCGAGTCAGAAAACATCACGGATTTCTGCAAACCAGGATTTGGCGTGTCTTGGGAACC 723
Query 600 CGGTTTAGAGTTACCCATGAGGATCAAAATGATGATGAAGTTGCAGAAAAGGAACATGAA 659
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 724 CGGTTTAGAGTTGCCCATGAGGATCAAGATGATGATGAAGTTGCAGAAAAGGAACATGAA 783
Query 660 TAAAGAATTGGAAGTAGTCTTGTTGACAAGCTCCATAACAGAATCTATCATCATCTTCTT 719
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 784 TAAAGAATTGGAAGTAGTCTTGTTGACAAGCTCCATAAGAGAATCTATCATCATCTTCTT 843
Query 720 TAATCagaaaaacagagaag-agaaaga-gagagagagagagaaattga-gaaagaataa 776
|||||||||||| |||||| ||| ||| |||||| || |||||| || ||| ||| |
Sbjct 844 TAATCAGAAAAATAGAGAAATAGAGAGAAGAGAGAAAGTGAGAAA--GAAGAA-GAAGGA 900
Query 777 gaagaaagaTAGTTTCTGCGAAAGAGACGGCTTTGTGAGACCTTTAAATTGA 828
||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 901 GAAGAAAGATAGTTTGTGCGAAAGAGACGGGTTTGTGAGACCTTTAAATTGA 952
Score = 281 bits (152), Expect = 6e-75
Identities = 423/548 (77%), Gaps = 41/548 (7%)
Strand=Plus/Plus
Query 11 AAGTCACACACTCCATTTCGCTCTCATTCTCTTCCAATCTCCCTTTCTCATCATTCTCTG 70
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 172 AAG-CACACACTCCATTTCGCTCTCATTCTCTTCCAAGCTCCCTTTCTCATCATTCTTTG 230
Query 71 TAAAATCTGAACCGG-----A-------TTTGGATGTTAACGATTGCTCAGAACCGGCGG 118
|| |||||||||| | |||||| || |||| || ||| ||||||||||
Sbjct 231 CAATGTCTGAACCGGGTTCCAAACCGGGTTTGGAGGTCAACGCTTTCTCCGAACCGGCGG 290
Query 119 GTTTGGAGGAGACATTCGACTTAAATATCA-CC-TCGGTTTCTTGTAAACCGGGCTTAGA 176
|||||||||||| | | |||||| |||||| || | |||| |||||||||||| |||||
Sbjct 291 GTTTGGAGGAGAGACTAGACTTAGATATCAGCCCT-GGTT-CTTGTAAACCGGTATTAGA 348
Query 177 TGTGAGATACGACTTAGAGATCAACACAGATT-T-GTCAAAACCGGGTTTGGACA--AGA 232
|||||||| ||||||||| |||| | | | || | || ||| || || || || |||
Sbjct 349 TGTGAGATTCGACTTAGATATCAGCCCCGGTTCTTGT-AAA-CCTGGATTAGATGTGAGA 406
Query 233 TAAC--CGTCTTCGATTTCAACCCTGATTTCCCAAAACCGGGTTTGGGAGA-GAGAACCG 289
| | || ||| || |||| | |||||| ||||||||||||||| | | ||||||||
Sbjct 407 TT-CTTCGACTTAGAGATCAAAACAGATTTCTCAAAACCGGGTTTGG-ACAAGAGAACCG 464
Query 290 GTT-CAGAATTCAACAATGA-TTTCTCAAAACCGGTTTTGGATGAGATAGTCGAC-TCAG 346
||| | || ||||| | | |||||||||||||| |||||| ||| | || | | ||
Sbjct 465 GTTTC-GATTTCAA-ACCCAATTTCTCAAAACCGGGTTTGGACAAGAGAACCGGCAT-AG 521
Query 347 AAATCATCACGAAGTTCTCAAAACCGGGTTTGGAAGAGAGAGCCGGCTCGGAATTCAACA 406
|| ||| || | | ||||||||| ||||||||||||||| || || ||| ||| || ||
Sbjct 522 AAGTCAACAGGGATTTCTCAAAATCGGGTTTGGAAGAGATAGTCGACTCTGAAATCCTCA 581
Query 407 AGGTTTTCTTAGAACCGGGTTTGGAA-GAGAGAGCCGACTCAGA-AGTCAACAAGGTTTT 464
||| |||| | |||||||||| || | |||| | || ||||| | ||| || || ||
Sbjct 582 CGGTATTCTCAAAACCGGGTTTAGATTG-GAGAACAGAGTCAGATA-TCATCATGGAATT 639
Query 465 CTTAAAACCGGGTTTGGAAGAGATAGTCGACTCAGAAATCATCATGGAATTCT-CAAAAC 523
|| |||||||||||| || |||| | ||| ||||||| ||||| ||| |||| |||| |
Sbjct 640 CTCAAAACCGGGTTTAGAGGAGAGAACCGAGTCAGAAAACATCACGGATTTCTGCAAA-C 698
Query 524 C-GGATTT 530
| ||||||
Sbjct 699 CAGGATTT 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5