BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888011
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily prot... 405 1e-112
AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily prot... 243 1e-63
AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily prote... 200 6e-51
> AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily protein
| chr2:12960827-12962162 REVERSE LENGTH=696
Length=696
Score = 405 bits (219), Expect = 1e-112
Identities = 267/290 (92%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 16 CGTCTTCGTCGCGGTCGCAGTTTTAGGCAAACCAAGTTCACTAGATCGCGACATGACTCC 75
|||||||||||||||| |||| |||||||||| ||||||||| |||| ||| |||||||
Sbjct 269 CGTCTTCGTCGCGGTCCCAGTCTTAGGCAAACTAAGTTCACTCGATCCCGATATGACTCT 328
Query 76 GAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAGGAAGATCTC 135
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 329 GAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAAGAAGATCTC 388
Query 136 ATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGGTC 195
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 389 ATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGAGTCGTA 448
Query 196 GGACGAAAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAACTCTGACT-TTTTCTC 254
||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| ||
Sbjct 449 GGAAGAAAGGCAAATGAGATTGAGAGATACTGGATTATGAGAAACTCTGACTATTTT-TC 507
Query 255 CCACAAACGACGACA-CTTTAACAATTCTCCCtttttttCTTCTCCTCCT 303
||||||||||||| ||| || |||||||||||||||||| || |||||
Sbjct 508 TCACAAACGACGACGTCTT-AATAATTCTCCCTTTTTTTCTACTTCTCCT 556
> AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily protein
| chr2:12964506-12965468 REVERSE LENGTH=303
Length=303
Score = 243 bits (131), Expect = 1e-63
Identities = 224/268 (84%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 1 ATGGATAATACCAACCGTCTTCGTCGCGGTCGCAGTTTTAGGCAAACCAAGTTCACTAGA 60
|||||||| |||||||||||||||| | ||||||| || |||| |||||||||||
Sbjct 1 ATGGATAACACCAACCGTCTTCGTCACCTTCGCAGTCGTAAGCAATCCAAGTTCACT--C 58
Query 61 TCGCGACATGACTCCGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTATGACCGA 119
| | | || | ||| ||| || | ||| | | ||||||||||||||| |||||| ||
Sbjct 59 TAG-GGGAT-A--CCGCAGAGGTAAATAGTGT-GAAATGGGAGTTTATCAATATGACGGA 113
Query 120 ACAAGAGGAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAAT 179
|||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct 114 ACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAAT 173
Query 180 AGCAGGAAGAGTGGTCGGACGAAAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAA 239
||||||||||||||| |||||| ||||||| || || || |||| |||||||||||||||
Sbjct 174 AGCAGGAAGAGTGGTAGGACGAGAGGCAAAGGACATAGAAAGATATTGGATTATGAGAAA 233
Query 240 CTCTGA-CTTTTTCTCCCACAAACGACG 266
|| ||| | || | ||||||||||||||
Sbjct 234 CTGTGATCATTGT-TCCCACAAACGACG 260
> AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily protein
| chr5:21582774-21584145 FORWARD LENGTH=645
Length=645
Score = 200 bits (108), Expect = 6e-51
Identities = 154/176 (88%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 67 CATGACTCCGAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAG 126
|||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct 191 CATGACTCTGAAGAAGTGAGCAGTATCGAATGGGAGTTTATCAACATGACTGAACAAGAA 250
Query 127 GAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGA 186
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 251 GAAGATCTCATCTTTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTGATAGCAGGA 310
Query 187 AGAGTGG-TCGGACGA-AAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAAC 240
||||| | ||| || || || | ||||| ||||||| |||||| |||||||||
Sbjct 311 AGAGTTCCT-GGAAGACAAC-CAGAGGAGATAGAGAGATATTGGATAATGAGAAAC 364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14175505218
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5