BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888011 Length=306 Score E Sequences producing significant alignments: (Bits) Value AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily prot... 405 1e-112 AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily prot... 243 1e-63 AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily prote... 200 6e-51 > AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily protein | chr2:12960827-12962162 REVERSE LENGTH=696 Length=696 Score = 405 bits (219), Expect = 1e-112 Identities = 267/290 (92%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 16 CGTCTTCGTCGCGGTCGCAGTTTTAGGCAAACCAAGTTCACTAGATCGCGACATGACTCC 75 |||||||||||||||| |||| |||||||||| ||||||||| |||| ||| ||||||| Sbjct 269 CGTCTTCGTCGCGGTCCCAGTCTTAGGCAAACTAAGTTCACTCGATCCCGATATGACTCT 328 Query 76 GAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAGGAAGATCTC 135 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 329 GAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAAGAAGATCTC 388 Query 136 ATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGGTC 195 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 389 ATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGAGTCGTA 448 Query 196 GGACGAAAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAACTCTGACT-TTTTCTC 254 ||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| || Sbjct 449 GGAAGAAAGGCAAATGAGATTGAGAGATACTGGATTATGAGAAACTCTGACTATTTT-TC 507 Query 255 CCACAAACGACGACA-CTTTAACAATTCTCCCtttttttCTTCTCCTCCT 303 ||||||||||||| ||| || |||||||||||||||||| || ||||| Sbjct 508 TCACAAACGACGACGTCTT-AATAATTCTCCCTTTTTTTCTACTTCTCCT 556 > AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily protein | chr2:12964506-12965468 REVERSE LENGTH=303 Length=303 Score = 243 bits (131), Expect = 1e-63 Identities = 224/268 (84%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 1 ATGGATAATACCAACCGTCTTCGTCGCGGTCGCAGTTTTAGGCAAACCAAGTTCACTAGA 60 |||||||| |||||||||||||||| | ||||||| || |||| ||||||||||| Sbjct 1 ATGGATAACACCAACCGTCTTCGTCACCTTCGCAGTCGTAAGCAATCCAAGTTCACT--C 58 Query 61 TCGCGACATGACTCCGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTATGACCGA 119 | | | || | ||| ||| || | ||| | | ||||||||||||||| |||||| || Sbjct 59 TAG-GGGAT-A--CCGCAGAGGTAAATAGTGT-GAAATGGGAGTTTATCAATATGACGGA 113 Query 120 ACAAGAGGAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAAT 179 |||||| ||||||||||||| ||||||| |||||||||| |||||||||||||||||||| Sbjct 114 ACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAAT 173 Query 180 AGCAGGAAGAGTGGTCGGACGAAAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAA 239 ||||||||||||||| |||||| ||||||| || || || |||| ||||||||||||||| Sbjct 174 AGCAGGAAGAGTGGTAGGACGAGAGGCAAAGGACATAGAAAGATATTGGATTATGAGAAA 233 Query 240 CTCTGA-CTTTTTCTCCCACAAACGACG 266 || ||| | || | |||||||||||||| Sbjct 234 CTGTGATCATTGT-TCCCACAAACGACG 260 > AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily protein | chr5:21582774-21584145 FORWARD LENGTH=645 Length=645 Score = 200 bits (108), Expect = 6e-51 Identities = 154/176 (88%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 67 CATGACTCCGAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAG 126 |||||||| ||||||||||| || ||||||||||||||||||| ||||| |||||||| Sbjct 191 CATGACTCTGAAGAAGTGAGCAGTATCGAATGGGAGTTTATCAACATGACTGAACAAGAA 250 Query 127 GAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGA 186 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 251 GAAGATCTCATCTTTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTGATAGCAGGA 310 Query 187 AGAGTGG-TCGGACGA-AAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAAC 240 ||||| | ||| || || || | ||||| ||||||| |||||| ||||||||| Sbjct 311 AGAGTTCCT-GGAAGACAAC-CAGAGGAGATAGAGAGATATTGGATAATGAGAAAC 364 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14175505218 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5