BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888029
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38230.2 | Symbols: CPK26 | calcium-dependent protein kinase... 2521 0.0
AT4G35310.1 | Symbols: CPK5, ATCPK5 | calmodulin-domain protein... 1050 0.0
> AT4G38230.2 | Symbols: CPK26 | calcium-dependent protein kinase
26 | chr4:17928817-17931371 REVERSE LENGTH=1815
Length=1815
Score = 2521 bits (1365), Expect = 0.0
Identities = 1425/1455 (98%), Gaps = 0/1455 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCACAGCGGTGGGAACCAAGCCTGCTATGTTCTTGGTCAAAAGACCCCAAGCATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 ATGAAGCACAGCGGTGGGAACCAAGCCTGCTATGTTCTTGGTCAAAAGACCCCAAGCATC 329
Query 61 CGAGATCTCTACTCGTTGGGACAAAAACTAGGTCAAGGACAGTTTGGGACGACTTACATG 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 330 CGAGATCTCTACTCGTTGGGACACAAACTAGGTCAAGGACAGTTTGGGACGACTTACATG 389
Query 121 TGCAGAGAGATCTCAACAGGGCGTGAATACGCGTGCAAATCTATAACAAAACGAAAGTTG 180
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 390 TGCAAAGAGATCTCAACAGGGCGTGAATACGCATGCAAGTCTATAACAAAACGAAAGTTG 449
Query 181 ATATCAAAGGAAGATGTGGAAGACGTGCGCAGGGAAATTCAAATCATGCACCATCTGGCT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 450 ATATCAAAGGAAGATGTGGAAGACGTACGCAGGGAAATTCAAATCATGCACCATCTGGCT 509
Query 241 GGTTACAAGAACATTGTCACCATTAAAGGTGCTTACGAGGATCCATTGTATGTTCACATC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GGCTACAAGAACATTGTCACCATTAAAGGTGCTTACGAGGATCCATTGTATGTTCACATC 569
Query 301 GTGATGGAGCTTTGCTCAGGTGGGGAACTGTTTGACAGAATTATCCAGAGAGGACATTAC 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 570 GTGATGGAGCTTTGCTCAGGTGGGGAATTGTTTGACAGAATTATCCAGAGAGGACATTAC 629
Query 361 AGTGAGAGAAAAGCAGCTGAGCTGATAAAGATCATTGTTGGTGTTGTTGAGGCTTGCCAT 420
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 630 AGCGAGAGAAAAGCAGCTGAGCTGATAAAGATCATCGTTGGTGTTGTTGAGGCTTGCCAT 689
Query 421 TCGCTTGGTGTCATGCATAGAGATCTAAAGCCCGAAAATTTCTTGTTGGTTAACAAGGAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TCGCTTGGTGTCATGCATAGAGATCTAAAGCCCGAAAATTTCTTGTTGGTTAACAAGGAC 749
Query 481 GATGACTTCTCTCTCAAAGCCATTGATTTTGGGCTTTCCGTGTTCTTCAAACCAGGTCAA 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GACGACTTCTCTCTCAAAGCCATTGATTTTGGGCTTTCCGTGTTCTTCAAACCAGGTCAA 809
Query 541 ATATTCGAGGATGTGGTTGGAAGTCCGTATTATGTTGCTCCTGAGGTTCTGCTCAAGCAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 ATATTCGAGGATGTGGTTGGAAGTCCGTATTATGTTGCTCCTGAGGTTCTGCTCAAGCAC 869
Query 601 TACGGACCAGAGGCTGATGTGTGGACAGCAGGGGTCATACTGTACATATTGGTGAGCGGA 660
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 870 TACGGACCCGAGGCTGATGTGTGGACCGCAGGGGTCATACTGTACATATTGGTGAGCGGA 929
Query 661 GTCCCTCCGTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCCGTGCTGAAGGGGCAT 720
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 930 GTCCCTCCGTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCAGTGCTGAAGGGACAT 989
Query 721 ATTGACTTTGACTCCGACCCTTGGCCCCTAATATCTGACTCTGCAAAAGACTTGATCCGT 780
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 990 ATTGACTTTGACTCCGACCCTTGGCCCCTAATATCCGACTCTGCAAAAAACTTGATCCGT 1049
Query 781 GGCATGCTATGTTCCCGGCCCTCTGAGCGACTGACAGCTCATCAAGTATTGCGCCATCCT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GGCATGCTATGTTCCCGGCCCTCTGAGCGACTGACAGCTCATCAAGTATTGCGCCATCCT 1109
Query 841 TGGATCTGTGAAAATGGAGTTGCGCCAGACAGAGCACTAGATCCTGCTGTGCTTTCTCGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TGGATCTGTGAAAATGGAGTTGCGCCAGACAGAGCACTAGATCCTGCTGTGCTTTCTCGT 1169
Query 901 CTTAAGCAGTTCTCTGCGATGAATAAACTAAAGCAGATGGCTTTAAGGGTAATAGCTGAG 960
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1170 CTTAAACAGTTCTCTGCGATGAATAAACTAAAGCAGATGGCTTTACGGGTAATAGCTGAG 1229
Query 961 AGTCTCTCGGAGGAAGAAATTGCTGGACTGAAGGAAATGTTCAAAGCAATGGACACGGAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 AGTCTCTCGGAGGAAGAAATTGCTGGACTGAAGGAAATGTTCAAAGCAATGGACACGGAT 1289
Query 1021 AACAGTGGAGCGATTACATTTGACGAGCTAAAAGCTGGGTTGCGAAGATATGGTTCTACC 1080
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1290 AACAGTGGAGCGATTACGTTTGACGAGCTGAAAGCCGGGTTGCGAAGATATGGTTCAACC 1349
Query 1081 CTGAAGGATACTGAGATTCGTGACCTTATGGAGGCTGCAGATATTGACAAGAGTGGGACC 1140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 CTCAAGGATACTGAGATTCGTGACCTTATGGAGGCTGCAGATATTGACAAGAGTGGGACC 1409
Query 1141 ATAGATTATGGTGAATTCATTGCTGCAACAATCCATCTGAACAAATTAGAGCGTGAGGAA 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1410 ATAGATTATGGTGAATTCATTGCTGCAACAATCCATCTGAACAAATTAGAGCGTGAAGAA 1469
Query 1201 CATCTTCTGTCAGCCTTCAGGTACTTTGACAAAGATGGCAGCGGTTACATCACTATCGAC 1260
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1470 CATCTTCTGTCAGCCTTCAGGTACTTTGACAAAGATGGGAGCGGTTACATCACTATCGAT 1529
Query 1261 GAGCTACAGCACGCATGTGCTGAACAGGGAATAAGTGATGTCTTTCTAGAAGATGTGATC 1320
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1530 GAGCTACAGCACGCATGTGCTGAACAGGGAATGAGTGATGTCTTTCTAGAAGATGTGATC 1589
Query 1321 AAGGAAGTCGACCAAGACAATGATGGAAGGATTGACTACGGAGAGTTTGTAGCTATGATG 1380
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1590 AAGGAAGTCGACCAAGACAATGATGGAAGGATTGACTACGGGGAGTTTGTAGCTATGATG 1649
Query 1381 CAGAAAGGCATTGTTGGAAGAACAATGAGGAAAAGTATAAACATGAGCCTCAGGAACAAT 1440
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1650 CAGAAAGGCATTGTTGGAAGAACAATGAGGAAAAGCATAAACATGAGCATCAGGAACAAT 1709
Query 1441 GCCGTCTCGCAGTGA 1455
|||||||||||||||
Sbjct 1710 GCCGTCTCGCAGTGA 1724
> AT4G35310.1 | Symbols: CPK5, ATCPK5 | calmodulin-domain protein
kinase 5 | chr4:16801987-16804995 FORWARD LENGTH=2263
Length=2263
Score = 1050 bits (568), Expect = 0.0
Identities = 1122/1388 (81%), Gaps = 43/1388 (3%)
Strand=Plus/Plus
Query 22 CAAGCCTGCTATGTTCTTGGTCAAAAGACCCCAAGCA-TC-CGAGATCTCTACTCGTTGG 79
||||| | ||||||||||||||| ||||| |||| || || || |||| ||| | ||
Sbjct 466 CAAGCTTACTATGTTCTTGGTCATAAGACACCAAACATTCGTGATATCTATAC-CCTT-A 523
Query 80 GACAAAAACTAGGTCAAGGACAGTTTGGGACGACTTA-CATGTGCAGAGAGATCT-CAAC 137
| | || ||||||||||| || ||||| |||||||| | | || | |||||| | | |
Sbjct 524 GCCGCAAGCTAGGTCAAGGTCAATTTGGAACGACTTATC-TATGTACAGAGAT-TGCCTC 581
Query 138 AGGGCG-TGAATACGCGTGCAAATCTATA-ACAAAACGAAAGTTGATATC-AAAGGAAGA 194
| |||| ||| ||||| || || || ||| ||| | | |||||||| || ||| |||||
Sbjct 582 A-GGCGTTGACTACGCTTGTAAGTCAATATCCAAGA-GGAAGTTGATCTCTAAA-GAAGA 638
Query 195 TGTGGAAGACGTGCGCAGGGAAATTCAAATCATGCACCATCTGGCTGGTTACAAG-AACA 253
||| || || || | ||||| ||||| || ||||| ||| | |||||| || | | |
Sbjct 639 TGTTGAGGATGTTAGAAGGGAGATTCAGATAATGCATCATTTAGCTGGTCAC-GGTAGTA 697
Query 254 TTGTCACCATTAAAGGTGCTTACGAGGATC-CATTGTATGTTCACATCGTGATGGAGCTT 312
| || || |||||||| ||||| ||||| | | |||||||||||||| || |||||||||
Sbjct 698 TCGTGACGATTAAAGGAGCTTATGAGGA-CTCTTTGTATGTTCACATTGTTATGGAGCTT 756
Query 313 TGCT-CAGGTGGGGAACTGTTTGACAGAATTATCCAGAGAGGACATTACAGTGAGAGAAA 371
|| | | || || ||| ||||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 757 TG-TGCTGGAGGTGAATTGTTTGATAGGATTATTCAGAGAGGACATTATAGTGAGAGGAA 815
Query 372 AGCAGCTGAGCTGA-TAAAGATCATTGTTGGTGTTGTTGAGGCTTGCCATTCGCTTGGTG 430
||| |||||||||| | ||||||||||| ||||||||||| || || |||||||||||||
Sbjct 816 AGCTGCTGAGCTGACT-AAGATCATTGTCGGTGTTGTTGAAGCGTGTCATTCGCTTGGTG 874
Query 431 TCATGCATAGAGATC-TAAAGCCCGAAAATTTCTTGTTGGTTAACAAGGACGATGACTTC 489
| ||||||||||| | | ||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct 875 TGATGCATAGAGA-CTTGAAGCCTGAGAATTTCTTATTGGTTAATAAGGATGATGATTTC 933
Query 490 TCTCTCAAAGCCATTGATTTTGGGCTTTCCGTGTTCTTCAAACCAGGTCAAATATTCGA- 548
|||||||| || |||||||||||||| || || || ||||||||||||||||||||| |
Sbjct 934 TCTCTCAAGGCTATTGATTTTGGGCTATCTGTCTTTTTCAAACCAGGTCAAATATTC-AC 992
Query 549 GGATGTGGTTGGAAGTCCGTATTATGTTGCTCCTGAGGTTCTGCTCAAGCACTACGGACC 608
||||| ||||||||||| ||||||||||||||||||||| ||||||| | || || ||
Sbjct 993 TGATGTTGTTGGAAGTCCATATTATGTTGCTCCTGAGGTTTTGCTCAAACGTTATGGGCC 1052
Query 609 AGAGGCTGATGTGTGGACAGCAGGGGTCATACTGTACATATTGGTGAGCGGAGTCCCTCC 668
|| |||||||||||||| || || || ||| |||| |||||| | ||||||||||| ||
Sbjct 1053 TGAAGCTGATGTGTGGACTGCTGGTGTTATATTGTATATATTGCTAAGCGGAGTCCCACC 1112
Query 669 GTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCCGTGCTGAAGGGGCATATTGACTT 728
||||||||||||||||||||||||||||||||||| ||| |||| || |||| |||||
Sbjct 1113 TTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCTGTGTTGAAAGGATATATCGACTT 1172
Query 729 TGACTCCGACCCTTGGCCCCTAATATCTGACTCTGCAAAAGACTTGATCCGTGGCATGCT 788
||| || ||||| ||||| | ||||| ||| ||| |||||||||||||| | ||| |
Sbjct 1173 TGAGTCAGACCCGTGGCCTGTGATATCCGACAGTGCTAAAGACTTGATCCGCAGAATGTT 1232
Query 789 ATGTTCCCGGCCCT-CTGAGCGACTGACAGCTCATCAAGTATTGCGCCATCCTTGGATCT 847
|| ||| ||| | | || || |||| |||||| |||| ||||| ||||| |||||||
Sbjct 1233 ATCCTCCAAGCC-TGCAGAACGTTTGACCGCTCATGAAGTCTTGCGTCATCCATGGATCT 1291
Query 848 GTGAAAATGGAGTTGCGCCAGACAGAGCACTAGATCCTGCTGTGCTTTCTCGTCTTAAGC 907
|||| ||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 1292 GTGAGAATGGTGTTGCACCAGATAGAGCACTAGATCCAGCTGTTCTTTCTCGTCTCAAGC 1351
Query 908 AGTTCTCTGCGATGAATAAACTAAAGCAGATGGCTTT-AAGGGTAATAGCTGAGAGTCTC 966
| |||||||| ||||||||||||||| |||||||||| |||| || ||||||||||||||
Sbjct 1352 AATTCTCTGCAATGAATAAACTAAAGAAGATGGCTTTGAAGGTTA-TAGCTGAGAGTCTC 1410
Query 967 TCGGAGGAAGAAATTGCTGGACTGAAG-GAAATGTT-CAAAGCAATGGACACGGATAACA 1024
||||| ||||| || ||||| | ||| |||||||| ||| |||||||| || |||||||
Sbjct 1411 TCGGAAGAAGAGATAGCTGGTTT-AAGAGAAATGTTTCAA-GCAATGGATACTGATAACA 1468
Query 1025 GTGGAGCGATTACATTTGACGAGCTAAAAGCTGGGTTGCGAAGATATGGTTCTACCCTGA 1084
| || || || |||||||| || || ||||||||| || ||| |||||| |||||| |||
Sbjct 1469 GCGGGGCAATCACATTTGATGAACTCAAAGCTGGGCTGAGAAAATATGGATCTACCTTGA 1528
Query 1085 AGGATACTGAGATTCGTGACCTTATGGAGGCTGCAGATATTGACAAGAGTGGGACCATAG 1144
| || || ||||| | ||| |||||||| || || ||| | ||||| |||||||| ||||
Sbjct 1529 AAGACACAGAGATCCATGATCTTATGGATGCGGCTGATGTAGACAACAGTGGGACAATAG 1588
Query 1145 ATTATGGTGAATTCATTGCTGCAACAATCCATCTGAACAAATTAGAGCGTGAGGAACATC 1204
|||| |||| |||||||| || || |||||||| |||||| ||||||| || || ||||
Sbjct 1589 ATTACAGTGAGTTCATTGCAGCGACGATCCATCTCAACAAACTAGAGCGGGAAGAGCATC 1648
Query 1205 TTCT-GTCAGCCTT-CAGGTACTTTGACAAAGATGGCAGCGGTTACATCACTATCGACGA 1262
|| | | |||| || || || |||||||||||||| ||||||| ||| || || || ||
Sbjct 1649 TTGTTG-CAGCGTTTCAA-TATTTTGACAAAGATGGAAGCGGTTTCATAACAATTGATGA 1706
Query 1263 GCTACAGCACGCATGTGCTGAACAGGGAATAAG-TGATGTCTTTC-TAGAAGATGTGATC 1320
|||||| || || |||| |||||| || || | |||||| |||| | ||||| | |||
Sbjct 1707 GCTACAACAAGCGTGTGTTGAACATGGCATG-GCTGATGT-TTTCCTTGAAGACATCATC 1764
Query 1321 AAGGAAGTCGACCAAGACAATGATGGAAGGATTGACTACGGAGAGTTTGTAGCTATGATG 1380
|| ||||| || ||| |||||||||||| |||||| || || |||||||| | ||||||
Sbjct 1765 AAAGAAGTTGATCAAAACAATGATGGAAAGATTGATTATGGTGAGTTTGTGGAGATGATG 1824
Query 1381 CAGAAAGG 1388
|| |||||
Sbjct 1825 CA-AAAGG 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5