BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888054
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domai... 929 0.0
AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domai... 481 4e-135
> AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:6824322-6825459 FORWARD LENGTH=1138
Length=1138
Score = 929 bits (503), Expect = 0.0
Identities = 583/622 (94%), Gaps = 4/622 (1%)
Strand=Plus/Plus
Query 7 TACTTACCGGAGCATCAACCGTCGAAGCTGCAAACTCCTCTCCTTCCGATGTTCATCCTC 66
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 167 TACTTACCGGAGCATCAACCGTCGAAGCTGTAAACTCCTCTCCTTCCGTTGCTCATCCTC 226
Query 67 CTCCTTCTCCGAGAAGCA-C-C-ACAACGCGAATCC-GCGATATCAAATGACCTAGTAGA 122
|||||||||||||| || | | ||||||||||||| | | |||| ||||| |||| ||
Sbjct 227 TTCCTTCTCCGAGAAACACCACAACAACGCGAATCCACCCAAATCAGATGACTTAGTCGA 286
Query 123 GCTTCCTCTCTTCCCACTAACTCTCGTTCTCTTCCCCGGCGCAACAATTCCGCTTCAGAT 182
||||||||| || |||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 287 GCTTCCTCTATTTCCACTACCTCTCGTTCTCTTCCCAGGCGCAACAATCCCGCTTCAGAT 346
Query 183 CTTCGAGTTCCGTTACCGAGTCATGATGCAGACGCTTGTCCAATCCGATCTCAGATTCGG 242
||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 347 CTTCGAGTTTCGTTACCGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGG 406
Query 243 CGTTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAATCGGTTGCGTCGGAGAAAT 302
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 407 CGTTGTCTACTCCGACGCTGTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAAT 466
Query 303 CGTGAAGCACGAGCGTCTCGTCGATGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACG 362
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 467 CGTGAAACACGAGCGTCTAGTCGACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACG 526
Query 363 ATTTCGCGTCACAGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAGGTGACGTGGCT 422
||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 527 ATTCCGAGTCACCGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCT 586
Query 423 TGAAGATCGACCGTCCGGGGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGTTTT 482
|||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |
Sbjct 587 TGAAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCT 646
Query 483 GATGATAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCA 542
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GATGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCA 706
Query 543 GGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCGTCGGAAGCACGTTTGA 602
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 707 GGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGA 766
Query 603 AGGAGCTCCGATGGAGCAGCAA 624
||||||||||||||||||||||
Sbjct 767 AGGAGCTCCGATGGAGCAGCAA 788
> AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:28327886-28329764 FORWARD LENGTH=1879
Length=1879
Score = 481 bits (260), Expect = 4e-135
Identities = 485/591 (82%), Gaps = 25/591 (4%)
Strand=Plus/Plus
Query 47 TCCTTCCGATGTTCATCCTCCTCCTTCTCCGAGAAGCACCACAACGCG-AATC-CGCGAT 104
||||||||||||||||| || || |||||||||||||| ||||||||| |||| | | |
Sbjct 236 TCCTTCCGATGTTCATCTTCTTCATTCTCCGAGAAGCATCACAACGCGAAATCTC-CAAA 294
Query 105 ATCAAATGACCTAGTAGAGCTTCCTCTCTTCCCACTAACTCTCGTTCTCTTCCCCGGCGC 164
||| |||| | || ||||||||||| || ||||| | ||||||||||||||||| ||
Sbjct 295 ATCCGATGATATCGTCGAGCTTCCTCTGTTTCCACTCCCACTCGTTCTCTTCCCCGGAGC 354
Query 165 AA-CAATTCCGCTTCAGATCTTCGAGTTCCGTTACCG-AGTCATGATGCAGACGCTTGTC 222
|| | |||| |||||||||||||| ||||||||||| | |||||||||| ||||| ||
Sbjct 355 AATC-CTTCCTCTTCAGATCTTCGAATTCCGTTACCGTA-TCATGATGCACACGCTCCTC 412
Query 223 CAATCCGATCTCA-GATTCGGCGTTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGG 281
||||| ||||| | |||||||||| || |||||||| |||| || || ||||| || |
Sbjct 413 CAATCTGATCT-ACGATTCGGCGTAGTTTACTCCGATTCCGTCTCTGGCTCCGCCGC-AG 470
Query 282 AA-TCGGTTGCGTCGGAGAAATCGTGAAGCACGAGCGTCTCGTCGATGATCGATTCTT-C 339
|| | || || || |||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 471 AAGTAGGATGTGTAGGAGAAGTCGTGAAACACGAGCGTCTCGTCGATGATCGATTCTTTC 530
Query 340 TTAATCTGTAAAGGTCAGGAACGATTTCGCGTCACAGA-TCTCGTCCGTACGAAACCTTA 398
| | |||| |||||||| |||||||| || ||||| || | |||| ||||||||||| ||
Sbjct 531 T-AGTCTGCAAAGGTCAAGAACGATTCCGAGTCAC-GAATGTCGTTCGTACGAAACCCTA 588
Query 399 CCTCGTCGC-GAAGGTGACGTGGCTTGAAGATCGACCGTCCGGGGAAGAGAATCTGGA-- 455
||| |||| |||| | ||||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 589 CCTTGTCGGAGAAG-TCACGTGGCTTGAAGATCGTCCTTCCGGTGAAGAAAATCTTGATT 647
Query 456 CGAATTGGCGAACGAGGTTGAGGTTTTGATGATAGAAGTGATTCGATTGTCGAATAGATT 515
|| || || || || || || ||| | |||| |||||||||| | || |||||||||||
Sbjct 648 CG--TTAGCTAATGAAGTCGAAGTTCTAATGAAAGAAGTGATTAGGTTATCGAATAGATT 705
Query 516 GAATGGGAAACCAGATAAGGAA-TCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGT 574
|||||| || | || || ||| | ||| |||||||||| ||||||||||||||| ||||
Sbjct 706 GAATGGTAAGGCTGAGAAAGAAGT-TCAAGATCTGAGGAGGAATCAGTTTCCGACGCCGT 764
Query 575 TCTCGTTTTTCGTCGGAAGCACGTTTGAAGGAGCTCCGATG-GAGCAGCAA 624
| ||||| ||||||||||| ||||||||||||||||| | | |||||||||
Sbjct 765 TTTCGTTCTTCGTCGGAAGTACGTTTGAAGGAGCTCCTA-GAGAGCAGCAA 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5