BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888078
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38760.1 | Symbols: | Protein of unknown function (DUF3414)... 2089 0.0
AT4G10845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 95.3 2e-18
> AT4G38760.1 | Symbols: | Protein of unknown function (DUF3414)
| chr4:18084908-18096166 REVERSE LENGTH=6023
Length=6023
Score = 2089 bits (1131), Expect = 0.0
Identities = 1201/1236 (97%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 504 GGGGATTCTTTCAGGTTCATATAATTTTAGAAAGCTGGCTGTGTCAGTTGAAGCACAGCA 563
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 726 GGGGATTCTTTCAGGTTCATATAATTTTAGCAAGCTGGCTGTGTCAGTTGAAGCACAACA 785
Query 564 TTCTGCATGTCGTGTTCAAATTCAGTTGCTGATGATTCTTATAGAAACGTTGGATATGGA 623
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 786 TTCTGCATGTCGTGTTCAAATTCAGTTGCTGATGATTCTTATAGAAACATTGGATATGGA 845
Query 624 GAATCTGTTACAAATGGTTCCCGACGGAGTACCTTTCAGGTCTGGCACTTGTGTCTTTTC 683
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 846 GAATCTGTTACAAATGGTTCACGACGGAGTACCTTTCAGGTCTGGCACTTGTGTCTTTTC 905
Query 684 CATTGTTGATGTCCAAGAGATGGATGCAACAATCTCAAGCCTCAACACTTTTGAAGTAAA 743
||||||||| || |||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct 906 CATTGTTGACGTTCAAGAGATGGATGCAACAATTTCAAGCCTTAACACTTCTGAAGTAAA 965
Query 744 AGAAGCAGGACCTCTCGTCCTGGCTTGGGCAGTATTTCTGTGTCTTATTTCATCACTTCC 803
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 966 CGAAGCAGGACCTCTCGTCCTGGCATGGGCAGTATTCCTGTGTCTTATTTCATCTCTTCC 1025
Query 804 TGGGAAGGAGGAAAGTCCTTTCCTGATGGATATTGATCACGTGAGCTATGTTCATCAAGC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TGGGAAGGAGGAAAGTCCTTTCCTGATGGATATTGATCACGTGAGCTATGTTCATCAAGC 1085
Query 864 TTTTGAGGCAGCATCCTTGAGCTATTTCCTTGAAATCCTTCAAAGTAATCTATTGAATGA 923
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CTTTGAGGCAGCATCCTTGAGCTATTTCCTTGAAATCCTTCAAAGTAATCTATTGAATGA 1145
Query 924 TTTTGATGGACCAATCTCTGGTCATCGTAGTGTCGTGAGGACTTTTATTTCAGCATTTAT 983
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TTTCGATGGACCAATTTCTGGTCATCGTAGTGTCGTGAGGACTTTTATTTCAGCATTTAT 1205
Query 984 TGCGTCTTATGAGATCAATCTTCAGCTGGAAGATGGCACCCTCGAGTTGATACTGGACAT 1043
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TGCATCTTATGAGATCAATCTTCAGCTGGAAGATGGCACCCTCGAGTTGATACTGGACAT 1265
Query 1044 CCTCTGTAAGGTTTATCAAGGAGAGGAGTCCCTCTGTAGTCAGTTTTGGGATCGAAAAAG 1103
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1266 CCTCTCTAAGGTTTATCAAGGAGAGGAGTCCCTCTGTTGTCAGTTTTGGGATCGAAAAAG 1325
Query 1104 TTTTGTTGATGGCCCTATCCGGTGTCTCCTCTTTGATCTGGAGAGTGAATTTCCATTCAG 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TTTTGTTGATGGCCCTATCCGGTGTCTCCTCTTTGATCTGGAGAGTGAATTTCCATTCAG 1385
Query 1164 AAGTGCTGAATTCATTCGTCTCTTGTCGTCCCTGAGTGAAGGAAGTTGGCCTGCTGAATG 1223
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AAGTGCTGAATTCATTCGCCTCTTGTCGTCCCTGAGTGAAGGAAGTTGGCCTGCTGAATG 1445
Query 1224 TGTATACAACTTTCTGGATAAATCAGTCGGGGTATCAACCTTATTTGATATTACTAGTGA 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 TGTATACAACTTTCTGGATAAATCAGTCGGGGTATCAACCTTATTTGATATTACTAGTGA 1505
Query 1284 CTCTCCAGCGGATGAGGCCTCTCAACTTATTGAAACTTCCCGGCCGTTGCATATTCCAGG 1343
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1506 CTCTCCAGCGGATGATGCCTCTCAACTTGTTGAAACTTCCCGGCCGTTGCATATTCCAGG 1565
Query 1344 TCTTGAAGGATTAGTTATTCCCAGTAATACTCGTGGGCGAATTCTGAGAGTAATCGGTGA 1403
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1566 TCTCGAAGGTTTAGTTATTCCCAGTAATACTCGTGGGCGAATTCTGAGAGTAATCAGTGA 1625
Query 1404 AAATACTGTCCTTGTACGGTGGGAGTATTCGCTATCCGGCGTAATTGTGTTGATCATCCG 1463
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1626 AAATACTGTCCTTGTACGGTGGGAGTATTCGCTATCCGGCATAATTGTGTTGATCATCCG 1685
Query 1464 TTTGGCCAATGGACTCTACATTGGTAACAATCGTGAATCTTTTGTGACTCTGGAGCTACT 1523
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1686 TTTGGCCAATAAACTCTACATTGGTAACAATCGTGAAGCTTTTGTGACTCTGGAGCTACT 1745
Query 1524 TCGTCGGATGGTGACATTTAACAAGGCCGTATGTTTCTCCTTACTGAATATGAGCCACTT 1583
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1746 TCGTCGGATGGTGACATTTAACAAGGCCGTATGTTTCTCCTTACTGAATATCAGCCACTT 1805
Query 1584 CTTTTATGTTCACGAATCTTATGTGAATGGGAAGATGGAAAGTGATGTGAGGGTGGTTGA 1643
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 CTTTTATGTTCAAGAATCTTATGTGAATGGGAAGATGGAAAGTGATGTGAGGGTGGTTGA 1865
Query 1644 TATAATTTGCAATTCAGTCAGAAGCCTGACTTTTGACTCTGGCGGTGCAGCTGTGATGGC 1703
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1866 TATAATTTGTAATTCAGTCAGAAGCCTGACTTTTGACTCTGGCGGTGCCGCTGTGATGGC 1925
Query 1704 AATGGCTATTGATATCTTAGCTAGACTTCTGCGATG 1739
||||||||||||||||||||||| ||| ||||||||
Sbjct 1926 AATGGCTATTGATATCTTAGCTAAACTACTGCGATG 1961
Score = 394 bits (213), Expect = 2e-108
Identities = 227/234 (97%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1 ATGTTCAAGCCACCGAGTGAGAAATCAAAAGAAGCTTTGAATTCGGATGTAGTCAAAATT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 157 ATGTTCAAGCCACCGAGTGAGAAATCAAAAGAAGCTTTGAATTCGGATCTAGTCAAAATT 216
Query 61 AAGGAGCACCAGTTGGTGATAAAGCCCCAGTTGAAAGATAAAGCGCTTCGAATCAGCTCT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 217 AAGGAGCACCAGTTGGTGATAAAGCCCCAATTGAAAGATAAAGCGCTTCGAATCAGCTCT 276
Query 121 CATCTGAATCTAGATGAAATCCAATCATACATCCTCGTGGAAAGATCTATGGAGCAGGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 CATCTGAATCTAGATGAAATCCAATCATACATCCTCGTGGAAAGATCTATGGAGCAGGAA 336
Query 181 TATGGAACCACTGACTCGGTTGCTCAAGAATTAGCTCAAGAATTCATAGACATG 234
|||||||| ||||||||||| ||||||||| || ||||||||||||| ||||||
Sbjct 337 TATGGAACAACTGACTCGGTAGCTCAAGAACTAACTCAAGAATTCATTGACATG 390
Score = 270 bits (146), Expect = 3e-71
Identities = 199/221 (90%), Gaps = 18/221 (8%)
Strand=Plus/Plus
Query 290 TTC-TTGA-A-GATACTGCTTCAGTATTACATACAGCGCCAGTGCCTACTAAAGTGTACA 346
||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TTCATTGACATGATACTGCTTCAGTATTACATACAGCGCCAGTGCCTACTAAAGTGTACA 438
Query 347 AAGCGTATTCTCATACATGCATAATTTGTACAGTATATGCGCCAAGTGAGGAAAGTACAA 406
|||||||||||||||||||| | | ||||||||||||| ||||||||| |||
Sbjct 439 AAGCGTATTCTCATACATGC---A----T----TATATGCGCCAAGAGAGGAAAGTTCAA 487
Query 407 TTAAGGAAGAAGCTGTAAAGCTGATCTCAGATGGGCTTGAAAGACGACAATCATCAGTT- 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 488 TTAAGGAAGAAGCTGTAAAGCTGATCTCAGATGGGCTTGAAAGACGACAATCATCCGTTC 547
Query 466 TTCGAGGACCTGTTT-TCCTCTTGTTTTCCACAGAATATGG 505
|| |||||||| ||| ||||||||||||||| |||||||||
Sbjct 548 TT-GAGGACCT-TTTGTCCTCTTGTTTTCCAAAGAATATGG 586
> AT4G10845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male
gametophyte, pollen tube; EXPRESSED DURING: L mature pollen
stage; BEST Arabidopsis thaliana protein match is: Protein
of unknown function (DUF3414) (TAIR:AT4G38760.1); Has 6 Blast
hits to 6 proteins in 3 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:6662595-6663964 FORWARD
LENGTH=821
Length=821
Score = 95.3 bits (51), Expect = 2e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 587 AGTTGCTGATGATTCTTATAGAAACGTTGGATATGGAGAATCTGTTACAAATGGTTC 643
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 236 AGTTGCTGATGATTCTTAAAGAAACGTCGGATATGGAGAATCTGTTACAAATGGTTC 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5