BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888078 Length=1743 Score E Sequences producing significant alignments: (Bits) Value AT4G38760.1 | Symbols: | Protein of unknown function (DUF3414)... 2089 0.0 AT4G10845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 95.3 2e-18 > AT4G38760.1 | Symbols: | Protein of unknown function (DUF3414) | chr4:18084908-18096166 REVERSE LENGTH=6023 Length=6023 Score = 2089 bits (1131), Expect = 0.0 Identities = 1201/1236 (97%), Gaps = 0/1236 (0%) Strand=Plus/Plus Query 504 GGGGATTCTTTCAGGTTCATATAATTTTAGAAAGCTGGCTGTGTCAGTTGAAGCACAGCA 563 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 726 GGGGATTCTTTCAGGTTCATATAATTTTAGCAAGCTGGCTGTGTCAGTTGAAGCACAACA 785 Query 564 TTCTGCATGTCGTGTTCAAATTCAGTTGCTGATGATTCTTATAGAAACGTTGGATATGGA 623 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 786 TTCTGCATGTCGTGTTCAAATTCAGTTGCTGATGATTCTTATAGAAACATTGGATATGGA 845 Query 624 GAATCTGTTACAAATGGTTCCCGACGGAGTACCTTTCAGGTCTGGCACTTGTGTCTTTTC 683 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 846 GAATCTGTTACAAATGGTTCACGACGGAGTACCTTTCAGGTCTGGCACTTGTGTCTTTTC 905 Query 684 CATTGTTGATGTCCAAGAGATGGATGCAACAATCTCAAGCCTCAACACTTTTGAAGTAAA 743 ||||||||| || |||||||||||||||||||| |||||||| ||||||| ||||||||| Sbjct 906 CATTGTTGACGTTCAAGAGATGGATGCAACAATTTCAAGCCTTAACACTTCTGAAGTAAA 965 Query 744 AGAAGCAGGACCTCTCGTCCTGGCTTGGGCAGTATTTCTGTGTCTTATTTCATCACTTCC 803 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct 966 CGAAGCAGGACCTCTCGTCCTGGCATGGGCAGTATTCCTGTGTCTTATTTCATCTCTTCC 1025 Query 804 TGGGAAGGAGGAAAGTCCTTTCCTGATGGATATTGATCACGTGAGCTATGTTCATCAAGC 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1026 TGGGAAGGAGGAAAGTCCTTTCCTGATGGATATTGATCACGTGAGCTATGTTCATCAAGC 1085 Query 864 TTTTGAGGCAGCATCCTTGAGCTATTTCCTTGAAATCCTTCAAAGTAATCTATTGAATGA 923 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 CTTTGAGGCAGCATCCTTGAGCTATTTCCTTGAAATCCTTCAAAGTAATCTATTGAATGA 1145 Query 924 TTTTGATGGACCAATCTCTGGTCATCGTAGTGTCGTGAGGACTTTTATTTCAGCATTTAT 983 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1146 TTTCGATGGACCAATTTCTGGTCATCGTAGTGTCGTGAGGACTTTTATTTCAGCATTTAT 1205 Query 984 TGCGTCTTATGAGATCAATCTTCAGCTGGAAGATGGCACCCTCGAGTTGATACTGGACAT 1043 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1206 TGCATCTTATGAGATCAATCTTCAGCTGGAAGATGGCACCCTCGAGTTGATACTGGACAT 1265 Query 1044 CCTCTGTAAGGTTTATCAAGGAGAGGAGTCCCTCTGTAGTCAGTTTTGGGATCGAAAAAG 1103 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1266 CCTCTCTAAGGTTTATCAAGGAGAGGAGTCCCTCTGTTGTCAGTTTTGGGATCGAAAAAG 1325 Query 1104 TTTTGTTGATGGCCCTATCCGGTGTCTCCTCTTTGATCTGGAGAGTGAATTTCCATTCAG 1163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1326 TTTTGTTGATGGCCCTATCCGGTGTCTCCTCTTTGATCTGGAGAGTGAATTTCCATTCAG 1385 Query 1164 AAGTGCTGAATTCATTCGTCTCTTGTCGTCCCTGAGTGAAGGAAGTTGGCCTGCTGAATG 1223 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1386 AAGTGCTGAATTCATTCGCCTCTTGTCGTCCCTGAGTGAAGGAAGTTGGCCTGCTGAATG 1445 Query 1224 TGTATACAACTTTCTGGATAAATCAGTCGGGGTATCAACCTTATTTGATATTACTAGTGA 1283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1446 TGTATACAACTTTCTGGATAAATCAGTCGGGGTATCAACCTTATTTGATATTACTAGTGA 1505 Query 1284 CTCTCCAGCGGATGAGGCCTCTCAACTTATTGAAACTTCCCGGCCGTTGCATATTCCAGG 1343 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1506 CTCTCCAGCGGATGATGCCTCTCAACTTGTTGAAACTTCCCGGCCGTTGCATATTCCAGG 1565 Query 1344 TCTTGAAGGATTAGTTATTCCCAGTAATACTCGTGGGCGAATTCTGAGAGTAATCGGTGA 1403 ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1566 TCTCGAAGGTTTAGTTATTCCCAGTAATACTCGTGGGCGAATTCTGAGAGTAATCAGTGA 1625 Query 1404 AAATACTGTCCTTGTACGGTGGGAGTATTCGCTATCCGGCGTAATTGTGTTGATCATCCG 1463 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1626 AAATACTGTCCTTGTACGGTGGGAGTATTCGCTATCCGGCATAATTGTGTTGATCATCCG 1685 Query 1464 TTTGGCCAATGGACTCTACATTGGTAACAATCGTGAATCTTTTGTGACTCTGGAGCTACT 1523 |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1686 TTTGGCCAATAAACTCTACATTGGTAACAATCGTGAAGCTTTTGTGACTCTGGAGCTACT 1745 Query 1524 TCGTCGGATGGTGACATTTAACAAGGCCGTATGTTTCTCCTTACTGAATATGAGCCACTT 1583 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1746 TCGTCGGATGGTGACATTTAACAAGGCCGTATGTTTCTCCTTACTGAATATCAGCCACTT 1805 Query 1584 CTTTTATGTTCACGAATCTTATGTGAATGGGAAGATGGAAAGTGATGTGAGGGTGGTTGA 1643 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1806 CTTTTATGTTCAAGAATCTTATGTGAATGGGAAGATGGAAAGTGATGTGAGGGTGGTTGA 1865 Query 1644 TATAATTTGCAATTCAGTCAGAAGCCTGACTTTTGACTCTGGCGGTGCAGCTGTGATGGC 1703 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1866 TATAATTTGTAATTCAGTCAGAAGCCTGACTTTTGACTCTGGCGGTGCCGCTGTGATGGC 1925 Query 1704 AATGGCTATTGATATCTTAGCTAGACTTCTGCGATG 1739 ||||||||||||||||||||||| ||| |||||||| Sbjct 1926 AATGGCTATTGATATCTTAGCTAAACTACTGCGATG 1961 Score = 394 bits (213), Expect = 2e-108 Identities = 227/234 (97%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1 ATGTTCAAGCCACCGAGTGAGAAATCAAAAGAAGCTTTGAATTCGGATGTAGTCAAAATT 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 157 ATGTTCAAGCCACCGAGTGAGAAATCAAAAGAAGCTTTGAATTCGGATCTAGTCAAAATT 216 Query 61 AAGGAGCACCAGTTGGTGATAAAGCCCCAGTTGAAAGATAAAGCGCTTCGAATCAGCTCT 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 217 AAGGAGCACCAGTTGGTGATAAAGCCCCAATTGAAAGATAAAGCGCTTCGAATCAGCTCT 276 Query 121 CATCTGAATCTAGATGAAATCCAATCATACATCCTCGTGGAAAGATCTATGGAGCAGGAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 CATCTGAATCTAGATGAAATCCAATCATACATCCTCGTGGAAAGATCTATGGAGCAGGAA 336 Query 181 TATGGAACCACTGACTCGGTTGCTCAAGAATTAGCTCAAGAATTCATAGACATG 234 |||||||| ||||||||||| ||||||||| || ||||||||||||| |||||| Sbjct 337 TATGGAACAACTGACTCGGTAGCTCAAGAACTAACTCAAGAATTCATTGACATG 390 Score = 270 bits (146), Expect = 3e-71 Identities = 199/221 (90%), Gaps = 18/221 (8%) Strand=Plus/Plus Query 290 TTC-TTGA-A-GATACTGCTTCAGTATTACATACAGCGCCAGTGCCTACTAAAGTGTACA 346 ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 TTCATTGACATGATACTGCTTCAGTATTACATACAGCGCCAGTGCCTACTAAAGTGTACA 438 Query 347 AAGCGTATTCTCATACATGCATAATTTGTACAGTATATGCGCCAAGTGAGGAAAGTACAA 406 |||||||||||||||||||| | | ||||||||||||| ||||||||| ||| Sbjct 439 AAGCGTATTCTCATACATGC---A----T----TATATGCGCCAAGAGAGGAAAGTTCAA 487 Query 407 TTAAGGAAGAAGCTGTAAAGCTGATCTCAGATGGGCTTGAAAGACGACAATCATCAGTT- 465 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 488 TTAAGGAAGAAGCTGTAAAGCTGATCTCAGATGGGCTTGAAAGACGACAATCATCCGTTC 547 Query 466 TTCGAGGACCTGTTT-TCCTCTTGTTTTCCACAGAATATGG 505 || |||||||| ||| ||||||||||||||| ||||||||| Sbjct 548 TT-GAGGACCT-TTTGTCCTCTTGTTTTCCAAAGAATATGG 586 > AT4G10845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3414) (TAIR:AT4G38760.1); Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:6662595-6663964 FORWARD LENGTH=821 Length=821 Score = 95.3 bits (51), Expect = 2e-18 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 587 AGTTGCTGATGATTCTTATAGAAACGTTGGATATGGAGAATCTGTTACAAATGGTTC 643 |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 236 AGTTGCTGATGATTCTTAAAGAAACGTCGGATATGGAGAATCTGTTACAAATGGTTC 292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86194335765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5