BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888084

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G10450.1 | Symbols:  | 14-3-3 family protein | chr2:4020305-...   161    3e-39


> AT2G10450.1 | Symbols:  | 14-3-3 family protein | chr2:4020305-4020773 
FORWARD LENGTH=249
Length=249

 Score =  161 bits (87),  Expect = 3e-39
 Identities = 93/96 (97%), Gaps = 0/96 (0%)
 Strand=Plus/Plus

Query  187  GACGAAGCAGGAGATGAGATCAAGGAGGCAGAACCAAAGGTCTTGTGCAAGTGTCATTCT  246
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  154  GACGAAGCAGGAGATGAGATCAAGGAGGCAGAACCAAAGGTCTTGTGCAAATGTCATTCT  213

Query  247  TGTTTCACTGTCTTGTCCAAACCAAAGCATAGTTAA  282
            |||||||||||||||||  |||||||||||||||||
Sbjct  214  TGTTTCACTGTCTTGTCGGAACCAAAGCATAGTTAA  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5