BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888090
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38900.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 2516 0.0
> AT4G38900.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr4:18139295-18141950 REVERSE
LENGTH=2251
Length=2251
Score = 2516 bits (1362), Expect = 0.0
Identities = 1604/1712 (94%), Gaps = 52/1712 (3%)
Strand=Plus/Plus
Query 1 ATGGGTGATACAGAGAAGTGTAGTAACAGTGATATGATCCAGAGACTTCATTCATCTTTC 60
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATGGGTGATACAGAGAA--GT-GTAACAGTGATATGATCCAGAGACTTCATTCATCTTTC 377
Query 61 GGCACAT-CGTCTTCTTCCATTCCCAAAAATTCCATTTCTCAGCTCGATTTAAACCCTAA 119
||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 378 GGCAC-TACTTCTTCTTCCATTCCCAAAAATCCCATTTCTCAGCTCGATTTAAACCCTAA 436
Query 120 TTTCATCCGCTCATCAGCTCCTCAATTCTCCAAGCCTTTCAGTGACAGTGGCAAACGAAT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TTTCATCCGCTCATCAGCTCCTCAATTCTCCAAGCCTTTCAGTGACAGTGGCAAACGAAT 496
Query 180 CGGTGTTCCTCCGTCGCACCCCAACTTAATCCCACCGACTTCTCCGTTTTCTCAGATCCC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CGGTGTTCCTCCGTCGCACCCCAACTTAATCCCACCGACTTCTCCGTTTTCTCAGATCCC 556
Query 240 GACCACCCGACAACCCGCTTCGCTTAATTTTAACCCGGGATCAGCTAGTCATTCGCGGTC 299
||||||||||||||||| ||||| |||||||||||||||| ||||| |||||| |||||
Sbjct 557 GACCACCCGACAACCCGGTTCGCATAATTTTAACCCGGGAGGAGCTAATCATTCACGGTC 616
Query 300 AATGTCACAGCCCAACTCTTTCTTCTCCTTCGATTCGTTACCTCCGTTAAGCCCTTCTCC 359
||||||||||||||||||||||||||| || || || ||||||||||||||||| | | |
Sbjct 617 AATGTCACAGCCCAACTCTTTCTTCTCTTTTGACTCCTTACCTCCGTTAAGCCC-T-T-C 673
Query 360 GTTTCGCGATTCTCTGTCGGCACAACCAGATCACGATGTCTCCATGGAGGATAGAGATTC 419
|| || | | || | |||||||||||| || |||||||||||||||||
Sbjct 674 ---TC-CG----T-T-TC-G-------AGATCACGATGTTTCAATGGAGGATAGAGATTC 715
Query 420 CGGCGGGTTTAACAGCAACCATTCGTTGCCTCCATCGCCGTTCACGAGGTGTAACTCGAC 479
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 716 CGGCGTGTTTAACAGCAACCATTCGTTGCCTCCATCGCCGTTCACGAGGTGTAATTCGAC 775
Query 480 CTCTTCTAGCTCCTTGAGAGTCGGTGAGAGTTTACCTCCGAGAAAGTCTCATAGACGCTC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CTCTTCTAGCTCCTTGAGAGTCGGTGAGAGTTTACCTCCGAGAAAGTCTCATAGACGCTC 835
Query 540 CAACAGTGATATTCCCAGTGGGTTTAATTCCATGATTGTTCAGAATTCGTTGCCTTTGAT 599
|||||||||||| ||||||||| | || | | ||| | | ||||||||||
Sbjct 836 CAACAGTGATATCCCCAGTGGG--T--TT--A--A---TTC-G-A-----TGCCTTTGAT 877
Query 600 TCCTCCAAGACCATTGGAGAGGTCTATTTCTGGTGGGGAATGTGCTGATTGGTCAAAGTC 659
||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 878 CCCTCCGAGACCATTGGAGAGGTCTTTTTCTGGTGGGGAGTGTGCTGATTGGTCAAAGTC 937
Query 660 TTCTCCTTTTGTGAAGAAGGAATCGAGCTGCGAAAGAGAAGGCGTCGGAGAGAGAGAAGC 719
| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 938 TAATCCTTTTGTGAAGAAGGAATCGAGCTGCGAAAGGGAAGGTGTCGGAGAGAGAGAAGC 997
Query 720 AATGGATGATCTCTTCTCAGCATATATGAATCTTGAAAACATTGATGTTTTGAACTCCTC 779
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 998 TATGGATGATCTCTTCTCAGCATATATGAATCTTGAAAACATTGATGTGTTGAACTCCTC 1057
Query 780 TGAGGCTGATGATAGCAAGAACGGTAATGAGAATAGGGATGATATGGAGAGCAGCAGAGC 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TGAAGCTGATGATAGCAAGAACGGTAATGAGAATAGGGATGATATGGAGAGCAGCAGAGC 1117
Query 840 AAGCGGGACGAAGACTAACGGTAGTGATACCGAAGGAGAGAGCAGCAGTGTGAATGAGAG 899
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1118 AAGCGGGACCAAGACTAACGGTAGTGATACGGAAGGAGAGAGCAGCAGTGTCAATGAGAG 1177
Query 900 TGCGAATAATAACAATAATTTGAATTCTTCGGGTGAAAAGAGAGAGAGTGTGAAGAGAAG 959
||| |||||| ||| | |||||||||| ||||||||||||||||| |||||||||||
Sbjct 1178 TGCCAATAAT---AAT-A--TGAATTCTTCTGGTGAAAAGAGAGAGAGCGTGAAGAGAAG 1231
Query 960 AGCGGCAGGAGGAGATATTGCTCCTACCACCAGACATTACAGGAGTGTTTCAGTGGACAG 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AGCGGCTGGAGGAGATATTGCTCCTACCACCAGACATTACAGGAGTGTTTCAGTGGACAG 1291
Query 1020 TTGTTTCATGGAGAAGTTGTCTTTTGGTGATGAATCACTAAAGCCGCCTCCTTCTCCTGG 1079
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1292 TTGTTTCATGGAGAAGTTGTCTTTTGGTGATGAATCTCTAAAGCCGCCTCCTTCTCCTGG 1351
Query 1080 AACTATGTCACGGAAAGTTTCCCCTACCAATTCGGTTGATGGGAATTCGGGTGCTGCTTT 1139
| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1352 ATCTATGTCAAGGAAAGTTTCCCCTACCAATTCGGTTGATGGGAACTCGGGTGCTGCTTT 1411
Query 1140 TAGCATCGAGTTTAAGAACGGTGAGTTTACTGCAGCGGAAATGAAGAAGATCATGGCAAA 1199
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 TAGCATCGAGTTCAATAACGGTGAGTTTACTGCAGCGGAAATGAAGAAGATCATGGCAAA 1471
Query 1200 TGATAAACTAGCGGAGATCGCCATGTCTGACCCTAAGCGTGTCAAAAGGAATGATCTTCT 1259
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1472 TGATAAACTAGCAGAGATGGCCATGTCTGACCCTAAACGTGTCAAAAGGAATGATCCTCT 1531
Query 1260 TTTCAGAATCTTGGCGAACCGTCAATCCGCAGCACGGTCAAAGGAGAGGAAGATGCGGTA 1319
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TTTCAGAATCTTAGCGAACCGTCAATCCGCAGCACGGTCAAAGGAGAGGAAGATGCGGTA 1591
Query 1320 CATAGTCGAATTGGAACACAAAGTGCAGACTCTTCAGACCGAGGCTACCACATTGTCTGC 1379
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 CATAGTAGAATTGGAACACAAAGTGCAGACTCTTCAGACCGAGGCTACCACATTGTCTGC 1651
Query 1380 TCAGCTCACGCTTTTGCAGCGAGATATGATTGGGTTCACAAATCAGAACAATGAGCTAAA 1439
||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||
Sbjct 1652 TCAGCTCACACTTTTGCAGCGCGATATGATGGGGTTGACAAATCAGAACAATGAGCTTAA 1711
Query 1440 GTTCCGTCTTCAAGCAATGGAGCAACAAGCGCGTCTTCGCGATGCTCTGAACGAAGCACT 1499
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 GTTCCGGCTTCAAGCAATGGAGCAACAAGCGCGTCTTCGCGATGCTCTGAACGAAGCACT 1771
Query 1500 GAATGGAGAAGTCCAGCGACTGAAACTGGCAATCGGTGAGA-CGAGTCAGAACGAATCAG 1558
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1772 GAATGGAGAAGTCCAGCGACTGAAACTGGCAATCGGTGAGAGC-AGTCAGAACGAATCAG 1830
Query 1559 AGAGATCAAAGATGCAATCACTCAACGCTGAGATGTTCCAGCAACTAAACATCAGCCAGT 1618
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1831 AGAGATCAAAGATGCAATCACTCAACGCTGAGATGTTCCAGCAACTCAACATCAGCCAGT 1890
Query 1619 TAAGACAGCAGCCACAACAGATGCAGCAACAGTCTCATCAGCAGAACCACCAGAATGGAG 1678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 TAAGACAGCAGCCACAACAGATGCAGCAACAGTCTCATCAGCAGAACCACCAGAATGGAA 1950
Query 1679 CCATGGCAACAAAATCTGAATCAAACGAATAG 1710
||||||||||||||||||||||||| ||||||
Sbjct 1951 CCATGGCAACAAAATCTGAATCAAATGAATAG 1982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5