BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888092
Length=330
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21065.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 239 1e-62
> AT1G21065.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Uncharacterised protein family UPF0047
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa
- 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes
- 1191 (source: NCBI BLink). | chr1:7374210-7375789 FORWARD
LENGTH=799
Length=799
Score = 239 bits (129), Expect = 1e-62
Identities = 142/148 (96%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 106 GAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTTGCAACA 164
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 304 GAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTTACAACA 362
Query 165 CACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGATACTGA 224
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGATACTGA 422
Query 225 GACTTTCTTGAACAGGATTGTTCCTGAG 252
||||||||||||||||||||||||||||
Sbjct 423 GACTTTCTTGAACAGGATTGTTCCTGAG 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15381931194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5