BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888113
Length=327
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39120.1 | Symbols: IMPL2, HISN7 | myo-inositol monophosphat... 440 3e-123
> AT4G39120.1 | Symbols: IMPL2, HISN7 | myo-inositol monophosphatase
like 2 | chr4:18220589-18227988 REVERSE LENGTH=1664
Length=1664
Score = 440 bits (238), Expect = 3e-123
Identities = 256/265 (97%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 63 GAGAGGATTATCAAGGTACTATTCAGGGAAAGCAAGATCATTCATTTGTATCTCAGATGT 122
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1141 GAGAGGATTATCAAGGTACTATTCAGGAAAAGCGAGATCATTCATATGTATCTCAGATGT 1200
Query 123 AAAATGCCTTGAAGATCTCAAGAAACCAACCCAAACTTTTGATGATGACGATGATGATGA 182
|||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1201 AAAATGCCTTGAGGATCTGAAGAAACCAACCCAAACTTTTGATGACGATGATGATGATGA 1260
Query 183 GGCTTACAAGAAGAGGAAGAAGAAGAACAAGCAATCATCTTCATCTTCATTTTCTGCTGC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1261 GGCTTACAAGAAGAGGAAGAAGAAGAACAAGCAATCATCTTCATCTTCATTTTCTGCAGC 1320
Query 243 TATTAACAGCAATGTGAATTTCTCAAACTACCCTTGTCGAAGAGTCTCTAGTAGCACCCA 302
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1321 TATTAACAGCAATGTGAATTTCTCAAACTACCCTTGTCGAAGGGTCTCTAGTAGCACCCA 1380
Query 303 CTGTTCCTCACCTTGTGTTGCTTAG 327
|||||||||||||||||||||||||
Sbjct 1381 CTGTTCCTCACCTTGTGTTGCTTAG 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15231127947
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5