BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888142
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21790.1 | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide ... 2584 0.0
> AT2G21790.1 | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide
reductase 1 | chr2:9293270-9297842 FORWARD LENGTH=2972
Length=2972
Score = 2584 bits (1399), Expect = 0.0
Identities = 2105/2447 (86%), Gaps = 44/2447 (2%)
Strand=Plus/Plus
Query 1 ATGTACGTTGTGAAGCGTGACGGTAAG-CAGGAAACTGTTCACTTCGACAAAATCACTGC 59
||||| || |||||||||||||| ||| |||||||||||||| ||||| || || |||||
Sbjct 260 ATGTATGTAGTGAAGCGTGACGG-AAGACAGGAAACTGTTCATTTCGATAAGATTACTGC 318
Query 60 GCGCCTAAAGAAACTTAGCTATGGGCTTAGTA-TCGATCACTGTGACCCTGTCCTTGTCG 118
| | || ||||||||||||||||||||||| | | || || |||||||||||||| || |
Sbjct 319 GAGGCTTAAGAAACTTAGCTATGGGCTTAGCAGT-GACCATTGTGACCCTGTCCTCGTTG 377
Query 119 CTCAGAAAGTCTGTGCCGGTGTCTACAAAGGCGTCACGACGAGTCAACTCGATGAGTTAG 178
||||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||| |
Sbjct 378 CTCAGAAGGTCTGTGCCGGTGTCTATAAAGGAGTCACTACGAGTCAACTTGATGAGTTGG 437
Query 179 CCGCCGAGACCGCTGCTGCTATGAC-GGCCAATCATCCTGATTACGCTTCCCTTGCGGCT 237
| || || || |||||||||||||| | || ||||||||||| || || ||||| |||
Sbjct 438 CTGCTGAAACTGCTGCTGCTATGACTTG-TAACCATCCTGATTATGCATCTCTTGCTGCT 496
Query 238 AGGATTGCTGTATCCAATCTGCATAAGAACACTAAGAAATCATTTTCTGAAACGGTT-AG 296
||||||||||| || ||||| || |||||||||||||| ||||||||||| ||| || ||
Sbjct 497 AGGATTGCTGTGTCGAATCTCCACAAGAACACTAAGAAGTCATTTTCTGAGACGATTAAG 556
Query 297 AGACATGTAC-AGTCATGTCAATGAGAGATCTGGACTCGCTTCTCCTCTAATTGCTGCTG 355
|| |||| | | |||||||||||| ||||||||||| || || ||||| || | ||
Sbjct 557 -GATATGTTCTA-TCATGTCAATGATAGATCTGGACTAAAGTCCCCACTAATAGCCGATG 614
Query 356 ATGTATACGAGATAATTATGAAGCATGCTACTCGTCTGGACAGTGAAATCATCTATGATC 415
|||| | |||||||||||| || | ||| ||||| |||||||||| ||||||||||| |
Sbjct 615 ATGTGTTTGAGATAATTATGCAGAACGCTGCTCGTTTGGACAGTGAGATCATCTATGACC 674
Query 416 GCGATTTTGAATATGATTACTTTGGATTTAAAACGCTTGAGAGATCATACCTCTTAAAAG 475
| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 675 GTGATTTTGAATATGATTACTTTGGATTTAAAACTCTTGAGAGATCGTACCTCTTGAAAG 734
Query 476 TGCAAGGCAAAGTGGTTGAAAGGCCTCAACACATGCTGATGAGGGTTTCTGTTGGCATCC 535
| ||||| | || ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 735 TCCAAGGGACTGTTGTTGAAAGGCCTCAACACATGCTGATGAGGGTTGCTGTTGGGATCC 794
Query 536 ACAAGGAAGATATCGATTCCGCT-ATCAAAACTTACCATTTAATGTCTCAGCGATGGTTC 594
||||||| ||||| ||||||| | ||| |||| |||||||| ||||||||| ||||||||
Sbjct 795 ACAAGGATGATATTGATTCCG-TGATCCAAACCTACCATTTGATGTCTCAGAGATGGTTC 853
Query 595 ACTCATGCATCTCCTACTCTCTTCAACTCAGGAACCCCAAGGGCTCAATTAAGCAGCTGC 654
||||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||
Sbjct 854 ACTCATGCATCTCCTACTCTCTTCAACGCAGGAACTCCAAGGCCTCAATTAAGTAGCTGC 913
Query 655 TTTCT-GATCTGCATGAAGGATGATAGCATCGAGGGGATATATGACACATTGAAAGAGTG 713
||||| | |||||||||| ||||||||||| ||||| |||||||| ||| | ||||||||
Sbjct 914 TTTCTAG-TCTGCATGAAAGATGATAGCATTGAGGGCATATATGAAACACTCAAAGAGTG 972
Query 714 TGCTGTTATAAGCAAATCGGCTGGGGGCATTGGTGTTTCAGTTCACAACATCCGTGCAAC 773
|||||||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||
Sbjct 973 TGCTGTTATAAGCAAATCTGCTGGGGGTATTGGTGTTTCAGTTCATAATATTCGTGCTAC 1032
Query 774 TGGAAGCTACATTCGTGGTACCAATGGAGCATCTAATGGTATTGTTCCAATGCTGAGGGT 833
||||| ||||||||||| || |||||| ||||||||||||||||||| |||||| | ||
Sbjct 1033 CGGAAGTTACATTCGTGGCACAAATGGAACATCTAATGGTATTGTTCCTATGCTGCGTGT 1092
Query 834 GTTCAATGATACTGCTCGTTATGTTGACCAAGGAGGAGGCAAGAGAAAAGGTGCCTTTGC 893
||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1093 ATTCAACGATACAGCTCGTTATGTTGACCAAGGAGGAGGCAAGAGAAAGGGAGCCTTTGC 1152
Query 894 CGTATATCTGGAGCCCTGGCATGCTGACATTTTTGACTTTCTGGAACTCCGAAAGAATCA 953
|| || |||||||| ||||||||||| | | ||| |||||||| || |||||||| ||
Sbjct 1153 TGTTTACCTGGAGCCATGGCATGCTGATGTCTATGAGTTTCTGGAGCTGCGAAAGAACCA 1212
Query 954 TGGAAAGGAGGAACACAGGGCTAGAGACTTGTTTTATGGTCTTTGGATACCCGATCTTTT 1013
||||||||| ||||||||||||||||| |||||||||| ||| ||| | || ||||||||
Sbjct 1213 TGGAAAGGAAGAACACAGGGCTAGAGATTTGTTTTATGCTCTCTGGCTTCCAGATCTTTT 1272
Query 1014 CATGGAGAGGGTTCAGACTGATGGGCAGTGGTCACTGTTTTGTCCTAATGAAGCTCCAGG 1073
|||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1273 CATGGAGAGGGTCCAGAATAATGGGCAGTGGTCACTGTTTTGTCCTAACGAAGCTCCAGG 1332
Query 1074 TTTGGCAGATTGTTGGGGTGCAGAGTTCGAGAGATTGTACACTCAGTACGAGAATCAG-G 1132
|||||||||||| ||||| || || || |||| | |||||||| |||| || || || |
Sbjct 1333 TTTGGCAGATTGCTGGGGAGCTGAATTTGAGACACTGTACACTAAGTATGA-AAG-AGAG 1390
Query 1133 GGAA-GGCCAAGAAGGTTGTCCAGGCACAGCAGCTTTGGTACGAAATCTTGACATCCCAA 1191
|||| |||||| |||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1391 GGAAAGGCCAAAAAGGTTGTTCAGGCGCAGCAGCTTTGGTACGAAATATTGACATCCCAG 1450
Query 1192 GTAGAAACAGGGACACCATACATGCTTTTCAAGGATTCATGTAACAGGAAAAGCAATCAA 1251
||||||||||| ||||||||||||||||||||||||||||| ||| | ||||| |||||
Sbjct 1451 GTAGAAACAGGAACACCATACATGCTTTTCAAGGATTCATGCAACCGAAAAAGTAATCAG 1510
Query 1252 CAAAATCTGGGTACCATCAAGTCTTCCAATTTATGCACCGAAATCCTTGAATACACAAGT 1311
||||||||||||||||| ||||| ||||| |||||||| |||||| |||| ||||| |||
Sbjct 1511 CAAAATCTGGGTACCATAAAGTCGTCCAACTTATGCACTGAAATCATTGAGTACACTAGT 1570
Query 1312 CCAACAGAAACGGCTGTGTGTAATCTTGCATCTATTGCTTTACCCCGGTTTGTAAGGGAG 1371
||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 1571 CCAACAGAAACTGCTGTGTGCAATCTTGCATCTATTGCTTTACCCAGATTTGTAAGGGAG 1630
Query 1372 AATGACATCCCCTTGGACTCACATCCGTCTAAGATTG-TAGGCAGTTTGGGCTCAAAGAA 1430
|| | |||| || ||||| ||||| ||||| | | | |||||| ||| |||||||||
Sbjct 1631 AAGGGTGTCCCATTAGACTCTCATCCACCTAAGCTCGCT-GGCAGTCTGGACTCAAAGAA 1689
Query 1431 TCGTTACTTTGATTTCGACAAGTTAGCAGAGGTGACTGCCACAGTGACTGTTAATCTTAA 1490
||||||||||||||| || || ||||||||||||||||| || || ||||||||||| ||
Sbjct 1690 TCGTTACTTTGATTTTGAAAAATTAGCAGAGGTGACTGCTACTGTTACTGTTAATCTCAA 1749
Query 1491 CAAGATTATAGATGTGAATCATTATCCAGTGGAGACAGCAAAAACCTCAAACATGCGACA 1550
||||| |||||||||||| | ||||| |||||||| |||||||| ||||||||||| ||
Sbjct 1750 TAAGATAATAGATGTGAATTACTATCCTGTGGAGACTGCAAAAACTTCAAACATGCGTCA 1809
Query 1551 TAGGCCTATCGGTATTGGTGTACAAGGTCTTGCAGATGCATTTATCCTTCTCGGAATGCC 1610
||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 1810 TAGACCTATTGGTATTGGTGTACAAGGCCTTGCAGATGCATTTATCCTCCTTGGAATGCC 1869
Query 1611 ATTTGATTCCCCTGAGTCTCAACAACTGAACAAAGACATATTTGAAACCATATACTACCA 1670
||||||||| || ||| | ||||||||||| || || ||||| |||||||||||||||||
Sbjct 1870 ATTTGATTCTCCAGAGGCCCAACAACTGAATAAGGATATATTCGAAACCATATACTACCA 1929
Query 1671 TGCACTCAA-GTCATCTTCAGAGATTGCTACTAAGGAG--GGTACATATGAAACTTAC-C 1726
||||||||| | ||||| ||||| ||||| | ||| | || | |||||||| || |
Sbjct 1930 TGCACTCAAAG-CATCTACAGAGCTTGCTGC-AAG-ACTTGGCCCCTATGAAACCTATGC 1986
Query 1727 AAGGAAGTCCTGTGAGTAAGGGAATTCTTCAACCTGATATGTGGAACGTAATTCCATCTG 1786
|||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| |
Sbjct 1987 T-GGAAGTCCCGTGAGTAAGGGAATCCTTCAACCTGACATGTGGAATGTAATTCCATCAG 2045
Query 1787 ACCGCTGGGACTGGGCTGCTCTCAGGGATATGATTTCAAAGAATGGAATCAGAAATTCTC 1846
|||||||||||||||||| ||| || |||||||| |||||||||||| | || || ||||
Sbjct 2046 ACCGCTGGGACTGGGCTGTTCTTAGAGATATGATATCAAAGAATGGAGTGAGGAACTCTC 2105
Query 1847 TTCTGGTGGCACCAATGCCTACTGCTTCAACCAGCCAGATTCTTGGGAACAATGAATGTT 1906
|| | || ||||||||||| |||||||||||||| || || |||||||||||||||||||
Sbjct 2106 TTTTAGTAGCACCAATGCCAACTGCTTCAACCAGTCAAATCCTTGGGAACAATGAATGTT 2165
Query 1907 TTGAACCTTATACCTCAAACATTTACAGTCGTAGAGTCTTAAGTGGTGAATTCGTAGTAG 1966
|||| || || || |||||||| ||||| || |||||||| ||||||||||||||||| |
Sbjct 2166 TTGAGCCCTACACATCAAACATCTACAGCCGCAGAGTCTTGAGTGGTGAATTCGTAGTGG 2225
Query 1967 TGAACAAGCATCTTCTTCATGACCTGACTGATATGGGACTCTGGTCTCCTACACTGAAAA 2026
| || ||||||||||| |||||||| |||||||||||||| ||| |||| || |||||||
Sbjct 2226 TTAATAAGCATCTTCTCCATGACCTAACTGATATGGGACTTTGGACTCCAACGCTGAAAA 2285
Query 2027 ACAAGAT-AAT-ACATGAGAATGGTTCTATCGTGAATGTCAAGGAGATACCTGACGACTT 2084
|||| || ||| | |||||||||||||||| || ||||| ||||||||||| |||||
Sbjct 2286 ACAA-ATTAATTA-ATGAGAATGGTTCTATAGTTAATGTTGCTGAGATACCTGATGACTT 2343
Query 2085 GAAAGCGATTTACAGGACTGTCTGGGAGATTAAGCAGAGAACAGTGGTTGACATGGCCGC 2144
||| ||||||||||| ||||||||||| || || |||||||||||||| |||||||| ||
Sbjct 2344 GAAGGCGATTTACAGAACTGTCTGGGAAATCAAACAGAGAACAGTGGTGGACATGGCTGC 2403
Query 2145 CGATCGTGGATGCTTTATAGATCAAAGCCAAAGTTTGAATATACACATGGA-AAAGCCAA 2203
||||||||||||| ||||||||||||||||| || || ||||||||||| ||| ||||
Sbjct 2404 TGATCGTGGATGCTACATAGATCAAAGCCAAAGCTTAAACATACACATGGACAAACCCAA 2463
Query 2204 ACTTTGCAAAACTCACTTCTTTACACTTCTACGCTTGGAAAAAGGGTTTGAAAAC-GGGA 2262
||| |||||||||||||| |||||||||| |||||||||||||| ||||||| ||||
Sbjct 2464 -CTTCGCAAAACTCACTTCGCTACACTTCTATACTTGGAAAAAGGGTCTGAAAACCGGGA 2522
Query 2263 ATGTACTACCTGCGATCACGTGCTGCAGCCGATGCGATAAAGTTCACAGTAGACACAGCA 2322
|||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 2523 -TGTACTACCTGCGATCCCGTGCTGCAGCTGATGCGATAAAGTTCACCGTTGACACAGCC 2581
Query 2323 ATGCT-AACGGAGAAGCCTAATGTAACTGA-GGA--CGAAGAAGCA-ACAGAAGAAGACA 2377
||||| || ||||||||| | |||| | || ||| | |||||| | | |||||| || |
Sbjct 2582 ATGCTCAA-GGAGAAGCCGAGTGTAGCAGAAGGAGACAAAGAAGTAGA-AGAAGAGGATA 2639
Query 2378 ACGAGACAAAGATGGGCACAGATGGTTTGCTCTTTGACAAACCGTGA 2424
| || || ||| ||| | |||||||| || || |||||||||| |||
Sbjct 2640 ATGAAACTAAGTTGG-CGCAGATGGTATGTTCCTTGACAAACCCTGA 2685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120380906910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5