BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888144
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39370.3 | Symbols: UBP27 | ubiquitin-specific protease 27 |... 1615 0.0
> AT4G39370.3 | Symbols: UBP27 | ubiquitin-specific protease 27
| chr4:18306135-18308755 FORWARD LENGTH=1905
Length=1905
Score = 1615 bits (874), Expect = 0.0
Identities = 1014/1082 (94%), Gaps = 7/1082 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCTCGTAGAGGTTCTTCCGACACAAAGGCGATTGTGTGTATCTTCACAGATAGA 60
||||||||| | ||||| | ||||| ||||| |||||||| ||| || |||| ||||||
Sbjct 258 ATGGTTTCTAGAAGAGG--C-TCCGAGACAAAAGCGATTGTCTGTGTCCTCACGGATAGA 314
Query 61 ATTAGGATCTCCAA-CAACTGGGTTTCGCATTTGTCTTTCGCTGGTCTACTTGGTGCTGC 119
||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 315 ATTAGGATCTCTAATCAA-TGGGTTTCGCATTTGTCTTTCGCTGGTCTACTTGGTGTTGC 373
Query 120 TGGTTTTGTATTTGCCCAACAACACGGTCTATTCCCCAACTTAAACAACCTAAAACTCTT 179
|||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||
Sbjct 374 TGGTTTCGTATTTGCCCAACAGCACGGTCTATTCCGCAACTTAAACAACTTAAAACTCTT 433
Query 180 CTCCGGTAAAGAAAAAGACGCCGGAGACGATTCTTTTCTCGTACCGGGCCTTCAAAATCT 239
|||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 434 CTCCGGTAGAGAAAAAGACTCCGGAGACGATTCTTTTCTCGTACCTGGCCTTCAAAATCT 493
Query 240 CGGGAATAACTGCTTCCTCAACGTCATCCTCCAGGCTCTCGCGAGCTGCAAAGATTTTCG 299
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 494 CGGAAATAACTGCTTCCTCAACGTCATCCTCCAGGCTCTAGCGAGCTGCAAAGATTTTAG 553
Query 300 GAGTTTTCTTCAATGGGTTTTAGAGGATGCGAGAGATTCCGTT-GCAGGAGAACTAGAGG 358
||||||||||||||||||| ||||||||||||||| || |||| |||||||||| |||||
Sbjct 554 GAGTTTTCTTCAATGGGTTCTAGAGGATGCGAGAGGTT-CGTTAGCAGGAGAACAAGAGG 612
Query 359 AACAGCTTCCTCTTACTTATGCTTTGTCTGCTTTACTACAAGAGCTCTGCACTGTTGCAA 418
|||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||| ||
Sbjct 613 AACAGCTTCCTCTTACTTTTGCTTTGTCTGCTTTATTACAAGAGCTCGGCACAGTTGGAA 672
Query 419 GTAGAAGATCTGTGTCTAGCCCTCGTAAAGTTATGGTGGCATTGACAGATTATGCCACAA 478
||||| ||||||| |||| ||||||||||||||||||| ||||||| || ||||||| ||
Sbjct 673 GTAGACGATCTGTATCTAACCCTCGTAAAGTTATGGTGACATTGACTGACTATGCCAAAA 732
Query 479 ATTTCAATTTGACAAGCCAACAGGATGCAGCAGAAGCCCTTCTTCATCTTATTTCTTCTT 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 733 ATTTCAATTTGACAAGCCAACAGGATGCAGCAGAAGCCCTTCTTCATCTTATATCTTCTT 792
Query 539 TGCAAGAAGAGATTGTAGTTTGTTATCGTCCTAGCCAAAGTTGTAATCTTTCGGATATAC 598
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 793 TGCAAGAAGAGATTGTAGTTTGTTATCGCCCTAGCCAAAGTAGTAATCTTTCGGATATAC 852
Query 599 TTTTCTCTCGCAACTTGAGAATGCTTGCGCCTAGTGAAGGCCTCCATGGTTTGATGGAGC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TTTTCTCTCGCAACTTGAGAATGCTTGCGCCTAGTGAAGGCCTCCATGGTTTGATGGAGC 912
Query 659 TCAAGAGATGGCATAAACATTTGCGTGGACCATTTGATGGGATTCTTGGTAGTACGTTGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 913 TCAAGAGATGGCATAAACATTTGCGTGGACCATTTGATGGGATTCTTGGTAGTACTTTAA 972
Query 719 TGTGTCGAACTTGTTCGTCTCAGATTTCGTTGGAGTTTCAGTTTTTTCATACTCTGCCTC 778
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 973 TGTGCCGAACTTGTTCATCTCAGATTTCTTTGGAGTTTCAGTTTTTTCATACTCTGCCTC 1032
Query 779 TTTCTCCTTTACTCCATAACGGTGGTTACAACATTATGTTTGGATGCACTTTGGAGAATT 838
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1033 TTTCTCCTTTACTCCATCACGGTGGTTACAACATTATGTCTGGATGCACTTTGGAGCATT 1092
Query 839 GCTTGAACAAGTTTCTCGATGCTGAGAAAGTCGAAAACTACTTCTGCTATAGATGCTGGC 898
||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 1093 GCTTGAAGAAGTTTCTTAACACTGAGAAAGTTGAAAACTACTTCTGCTATAGATGCTGGC 1152
Query 899 ATGGTGCTGCACTGAAATATTTATCTGTGATAGGAGCAGCTGAGATAGATATCGAAAAGG 958
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1153 ATGGTGCTGCACTGAAATATTTATCTGTGATAGGAGCAGCTGAGACGGAAATCGAAAAGC 1212
Query 959 TCAGGAGCTGTGGCGGAGAGGACCAATGTGACTGTAAAACTTCTCATCATCTTCAAAGAA 1018
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1213 TCAGGAGCTGTGGCGGAGAGGACCAATGTGACTGTAAAACTTCTCTTCATCTTCAAAGAA 1272
Query 1019 TGCCTTGGTCAAACAGCTATTCCCATATATTGAAGCAGTTAATCATTGCCCGTCTCCCAA 1078
||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct 1273 TGCCTTGGTCAAATAGCTATTCCCATATATTGAAACAGTTAATCATCGCCCGTTTCCCAA 1332
Query 1079 AG 1080
||
Sbjct 1333 AG 1334
Score = 571 bits (309), Expect = 6e-162
Identities = 381/414 (92%), Gaps = 11/414 (3%)
Strand=Plus/Plus
Query 1077 AAAGCTCCTATGCATTCAAGTGCAACGTGCTTCATTTAACATGTTTGAAGAATTCAAACT 1136
||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 1365 AAA-CTCCTATGCATTCAAGTGCAACGCGCTTCGTTTAACATGTTTGAGGAATTCAAACT 1423
Query 1137 ATCGGGACATATCGCATTTCCACTTGTCTTAG-ACCTCTCCTTGTTCACACCAACTTCAA 1195
||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1424 GTCGGGACATATCGCATTTCCACTTGTCTT-GAACCTCTCCTTGTTCACACCATCTTCAA 1482
Query 1196 TAGGCTTAAACATAGAAGAAAGGATTGAGATATCTTCAGAGTACCAAAAGCCAGAAGCAT 1255
||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1483 TAGGCGTAAACATAGAAGAAAGGATTGAGATGTCGTCAGAGTACCAAAAGCCAGAAGCAT 1542
Query 1256 CAAGAAAGCATGGCATATACAGGCTTGTGACGGTGGTGGAACATTTTGGTAGAACCGGAA 1315
||| ||| || ||||| ||||||||||| || || ||||| |||||||||||||||||||
Sbjct 1543 CAAAAAATCACGGCATGTACAGGCTTGTAACAGTAGTGGAGCATTTTGGTAGAACCGGAA 1602
Query 1316 GCGGGCATTACACTGTTTATAGAAGTGTGAGAGTG-TCATCACAAGA-G--GAAGAAGAA 1371
|||||||||| ||||| || ||||||||||||||| || |||||||| | |||||||||
Sbjct 1603 GCGGGCATTATACTGTATACAGAAGTGTGAGAGTGTTC-TCACAAGAGGAAGAAGAAGAA 1661
Query 1372 GA-T-TG-TGAGGAATTGTGCTGGTTTAGTATATCTGATTCAGAAGTTTGCAGAGTTTCA 1428
|| | || |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 GATTGTGATGAGGATTTGAGCTGGTTTAGTATATCTGATTCAGAAGTTTGCAGAGTTTCA 1721
Query 1429 GAGAGTGATGTTCTTGGTGCTGAAGCTAGCTTGCTCTTCTATGAAAGGCTGTGA 1482
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1722 GAGAGTGATGTTCTTGGTGCTGAAGCTAGCTTGCTCTTCTATGAAAGGCTTTGA 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5