BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888149
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39420.2 | Symbols: | unknown protein; INVOLVED IN: biologi... 3493 0.0
> AT4G39420.2 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown;
EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible,
LP.02 two leaves visible; Has 20 Blast hits to 19 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:18339287-18355093 FORWARD LENGTH=10189
Length=10189
Score = 3493 bits (1891), Expect = 0.0
Identities = 2173/2307 (94%), Gaps = 27/2307 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAAGTTGGTGAATGAAGGCCCAACTCTGCTGCAATTGCACAAGTGGGAACCTTCT 60
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 243 ATGGAAAAGTTGGTGAAGGAAGGCCCAACTCTGCTGCAACTGCACAAGTGGGAACCTTCT 302
Query 61 CAATTGCAACTGAAGCTCTCAGAATTTCGTGAGGCGTTTATTTCTCCGTCGAGGCAGTTG 120
||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 303 CAATTTCAACTCAAGCTATCAGAATTTCGCGAGGCGTTTATTTCTCCGTCGAGGCAGTTG 362
Query 121 CTATTACTACTCTCGTACCACTCCCAAGCTTTGCTGCTTCCTTTGGTTGCAGGGAGGTCC 180
||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 363 TTATTACTACTCTCTTACCACTCCGAAGCTTTACTGCTTCCTTTGGTTGCAGGGAGGTCC 422
Query 181 ATTGGCAGTGAGGTTTCGGTAAGCT-GTCATAGTGAAGAGCCGAATAGTCCTACATTCTC 239
|||||||||||||||||| |||| | || ||| ||||||| |||||||||| ||| |||
Sbjct 423 ATTGGCAGTGAGGTTTCGTTAAG-TGGTGATAATGAAGAGTTGAATAGTCCTTCATGCTC 481
Query 240 TGGTGGGTCAGATCC------------A---CCTTCTGGATCAGGTGTTGGTTCTGGTGA 284
||||||||||||||| | |||| ||||||||| ||||||||||||||
Sbjct 482 TGGTGGGTCAGATCCAGAGAAAATTGAATCTCCTTGTGGATCAGGAGTTGGTTCTGGTGA 541
Query 285 GCCAGGTTTTGTAGATAATTTCAGTTCTAGTTGCAATAGTTTCCCTTTTATCTTTGATGT 344
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 542 GCCTGGTTTTGTAGATAATTGCAGTTCTAGTTGCAATAGTTTCCCTTTTATCTTTGATGC 601
Query 345 AAAGTCTGTTGCTTGGGGTAGTTGTGGAGATACTTACAATCGGCACAAAGATCCTTTGTT 404
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 602 AAAGTCTGTTGCTTGGGGTAGTTGTGGGGATACTTACAATCGGCACAAAGATCCTTTGTT 661
Query 405 TAGGGAATTGTTGTTTGTATCTGGAAATCATGGTGTTACGGTCCATGCTTTTTGCTGTAC 464
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 662 TAGGGAATTGTTGTTTGTATCTGGAAATCATGGTGTTACGGTCCACGCTTTTTGCTGTAC 721
Query 465 AAAAGATTCAAGTGACAGAGCCAAAGACAAACCTAATGGTGAGCTGAGGCATGGGGAGTG 524
|||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 722 AAAAGATTTAAGTGACAAAGCCAAAGGCAAACCAAATGGTGAGCTGAGGCATGGGGAGTG 781
Query 525 GGTTGAATGGGGACCTTCTAGGCTTAATCAGAAATCAGAACATGAAAGAGTCTCTTCTTT 584
|||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 782 GGTTGAGTGGGGACCTTCTAGGCTTAGTCAGAAATCAGAACCGGAAAGAGTCTCTTCTTC 841
Query 585 TGATGGCGCAAAGCAGTGGATGCAATCTTTTTTGATTGATTTGGAAACTACTGAAATTGA 644
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 842 TGATGGCTCAAAGCAGTGGATGCAATCTTTTTTGATTGATTTGGAAACTACTGTAATTGA 901
Query 645 GGGTATAAGACAGTCAAGGTTCCCTGAGAAGTCAGCGTTTCCTGCTTCTGCAGAGGTTGT 704
|||| ||||||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 902 TGGTACAAGACAGTCGAGGTTCCCTGAGAAGTCAGCGTTTCCGGGTTCTGCAGAGGTTGT 961
Query 705 TTCATTCAGCATATTAAATACTGATTTACCTTTCTCGAATCTTCTTTTCCAAGACAACTC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TTCATTCAGCATATTAAATACTGATTTACCTTTCTCGAATCTTCTTTTCCAAGACAACTC 1021
Query 765 CATACTTCAGAAGGATAATATGCCTGAGGATGGTAATGTAAATGACAATAATTTTCTCGT 824
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CATACTTCCGAAGGATAATATGCCTGAGGATGGTAATGTAAATGACAATAATTTTCTCGT 1081
Query 825 AGCATCAGATCCAGCTGCTTTGGATGAAAAATCTCGAGCTGATATGCCCATAAACAATGC 884
|||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1082 AGCATCTGATCCAACTGCTTTGGATGAAAAATCTCGAGCTGATATGCCCGTAAACAATGT 1141
Query 885 CAGTGTAAGCAGCTTGTACAGGTGCATCAAAGTTTTCTCCAGCGATTCTCATTCTCTGAT 944
|||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1142 CAGTGTAAACAGTTTGTACAGGTGCATCAAAGTTTTCTCCAGCGATGCTCATTCTCTGAT 1201
Query 945 TGGATTTGTTATGGAGTTATCGGATTGTGCATCTACCCCTACAAGCAATGAAAACGAAAG 1004
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct 1202 TGGATTTGTTATGGAGTTATCGGATTGTGCATCTACGCCTAGAAGGAATGAAAACGAAAG 1261
Query 1005 AAGCAAGGGTAAGAGAATTGTCTTTGTTGCCAAGCTGTTTAGCTGGGGGATAGAATGGGC 1064
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AAGCAAGGGTAAGAGAAATATCTTTGTTGCCAAGCTGTTTAGCTGGGGGATAGAATGGGT 1321
Query 1065 CTCCCTTGTGAAGTTCGGGGAATCAAGTATTGGACCTACAAATGAGTGGGCAGATTTCCG 1124
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CTCCCTTGTGAAGTTTGGTGAGTCAAGTATTGGACCTACAAATGAGTGGGCAGATTTCCG 1381
Query 1125 GCTATCTGATAAATTTGTTATCTGCCTCAGTGTTTCTGGTTTGATCTTTCTATATGATGT 1184
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 GCTATCCGATAACTTTGTTATCTGCCTCAGTGTTTCTGGTTTGATCTTTCTATATGATGT 1441
Query 1185 GAATTCTGGGGATTTTATTTCTCATGGGGATATCTTACAGACATGCAGTCGTGGATTGCA 1244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1442 GAATTCTGGGGATTTTATTTCTCATGGGGATATCTTACAGACATGCGGTCGTGGATTGCA 1501
Query 1245 TTCTTCATCAGATATGCAAGAAGCAACTGCAGAAGTAGATCAGCGAAGTAACTTTCAAAA 1304
|||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 1502 TTCTTCATCAGATAGGCAAGAAGCAACTGCAGAAGCAGATCAGCTAAGTGACTTTCAAAA 1561
Query 1305 TCGTGTTCCATCCATGTCTAAGACTTGCATTGTTGGTTCCGCAGACAGAAGAAAGTTTAG 1364
||||| ||||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1562 TCGTGCTCCATCCATGTCTAAGACTTGTATTGTTGGTTCCACGGACAGAAGAAAGTTTAG 1621
Query 1365 AAAGCTTATCGTAGCTTCTCATACACCACTCATAGCTGCAGTTGACGAAAATGGTTTGGT 1424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 AAAGCTTATTGTAGCTTCTCATACACCACTCATAGCTGCAGTTGACGAAAATGGTTTGGT 1681
Query 1425 ATATGTATCATGTGTTGATGACTTTGTTTCCAAGGAATACCACATGTCCGTGGAACCTAT 1484
|||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1682 ATATGTATTATGTGTCAATGACTTTGTTTCCAAGGAATACCACATGGCCGCGGAACCTAT 1741
Query 1485 TCCTGATTTACGTCATCTTGGGCTTGGAAGTCTGGTTGGGTGGAAAATCGGCGGCATGGA 1544
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 TCCTGATTTACTTCATCTTGGGCTTGGAAGTCTGGTTGGGTGGAAAATCGGCGGCATGGA 1801
Query 1545 CGTTGGCCAGAAAAAAGTGCACCATCCTAGCTCCTCTGGCTCTCGAGGTGAAGATGCTTT 1604
| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1802 CATTGGCCAGAAAAAAGTGCACCACCCTAGTTCCTCTGGGTCTCGAGGTGAAGATGCTTT 1861
Query 1605 TTCCAGGTGTGATCCTAGCTTTTCTGCTTCGGAAATCTCGATATCTGACCCATGTTTGGA 1664
||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1862 TTCCAGGCGTGATCTTAGCTTTTCTGCTTCGGAAATCTCGATGTCTGACCCATGTTTGGA 1921
Query 1665 AAGAAAACATAACAATTTTGATCGAAGAGCTGGTTACTCTGGTTCATGGTTGAGTGGTTT 1724
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 AAGACAACAGAACAATTTTGATCGAAGAGCTGGTTACTCTGGTTCATGGTTGAGTGGTTT 1981
Query 1725 TTCTGTTCAGCCTAAAACGAATTTGCTGAGACTTGAAAA-TTTCCGAAGAGACTCGCATG 1783
||||| ||||||||||| ||| ||||| ||||||||| |||| |||||||||||||||
Sbjct 1982 TTCTGCACAGCCTAAAACAAATGGGCTGAAACTTGAAAAATTTC-GAAGAGACTCGCATG 2040
Query 1784 TCATGCGGAAGATGTTTCTATCCACTGAAAAATTAGGATTGGATGATAACATATGTTTTT 1843
||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2041 TCACGCGGAAGATGTTTCTATCCGCCGAAAAATTAGGATTGGATGATAACATATGTTTTT 2100
Query 1844 CTCCAT-TGGGATTTACTCATTTCTCTAGAAAGTATACAAATAAGGACGATCGAAGCTGT 1902
|||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2101 CTCCATATGG-ATTCACTCATTTCTCTAGAAAGTATACAAATAAGGATGATCGAAGCTGT 2159
Query 1903 AAGATTTTTCATTATAGTCTGCAGACGCATATGACTACGAGAGATGATAGTTATTTGAAT 1962
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2160 AAGATTTTTCATTATAGTCTGCAGACGCATATGACTGCGAGAGATGATAGTTATTTGAAT 2219
Query 1963 TACAATGTCAACAATGA-TTCTATTCAAGGTGCAGAAGAGAGTTTCATAGGAGAATCAGT 2021
||| |||||||||| || |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 2220 TACGATGTCAACAA-GAATTCTATTCAAGGTGCAGAGGAGAATTTCATAGGAGAATCAGT 2278
Query 2022 TGGTTGCTCTTTCCAAGGATTTCTTTATTTGGTGACTTGT-AGTGGTCTTTCAGTTTTTC 2080
|||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||
Sbjct 2279 TGGTTGCTCTTTCCAAGGATTTCTTTTTTTGGTGACTTGTGA-TGGTCTTTCGGTTTTTC 2337
Query 2081 TCCCTTCTATCTCAATAACCTCAAATTACCCAACTGTTGAGGCCATTGAATATCTGCAGC 2140
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2338 TCCCTTCTATCTCAATAACCTCAAATTACCCAACTATTGAGGCCATTGAATATCTGCAGC 2397
Query 2141 CACTCCAGACCACTGTCATGGGATACCAGGAAAGAGACGATTTGAG-AGCAGGGGAATCA 2199
|| |||||||||||||||||||||||| || ||||||||||||| | |||||||||||||
Sbjct 2398 CATTCCAGACCACTGTCATGGGATACCGGGGAAGAGACGATTTG-GCAGCAGGGGAATCA 2456
Query 2200 CGTTTTCCTTGGCAAGTTGAGGTCATAGATAGAGTTATCTTGTTTGAAGGCCCTGAAGTA 2259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2457 CGTTTTCCTTGGCAAGTTGAGGTCATAGATAGAGTTATCTTGTTTGAAGGCCCTGAAGTT 2516
Query 2260 GCAGATCATGTATGCTTGGAAAATGGT 2286
||||||||| |||||||||||||||||
Sbjct 2517 GCAGATCATTTATGCTTGGAAAATGGT 2543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114808646415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5