BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888153
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39460.1 | Symbols: SAMC1, SAMT1 | S-adenosylmethionine carr... 1635 0.0
> AT4G39460.1 | Symbols: SAMC1, SAMT1 | S-adenosylmethionine carrier
1 | chr4:18355993-18358893 REVERSE LENGTH=1188
Length=1188
Score = 1635 bits (885), Expect = 0.0
Identities = 947/978 (97%), Gaps = 0/978 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCTCTTACTCTCTCTGTTGATGTGAAGAGCTCTTCAGCCACTTCTCCTGATGTT 60
|||||||||||||||||||| ||||||||||||||||||||||| || |||| |||||||
Sbjct 111 ATGGCTCCTCTTACTCTCTCCGTTGATGTGAAGAGCTCTTCAGCGACCTCTCATGATGTT 170
Query 61 TCCAAGAGGGTAATGCACAGTCCACAGCTCAAAATGAGCCAAGGCTTTTTTGCATCTGTT 120
|| |||||||||||||| ||| ||||||||||||| | | ||||||||||||||||||||
Sbjct 171 TCGAAGAGGGTAATGCAGAGTTCACAGCTCAAAATAAACAAAGGCTTTTTTGCATCTGTT 230
Query 121 AATACGCAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGAGGGATTTATAGCA 180
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 231 AATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGAGGGGTTTATAGCA 290
Query 181 GGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACT 350
Query 241 AGACTTCAGGCAGCTCGTGGAGGTGGGAAAATTGTTTTGAAGGGTCTTTATTCAGGATTA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 351 AGACTTCAGGCAGCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTA 410
Query 301 GCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTTGGAGTTTATGAACCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 411 GCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCC 470
Query 361 ACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGACA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGACT 530
Query 421 GCAGGGGCCATCGGTGGACTTGCTGCCTCTCTGATTCGAGTGCCTACAGAGGTTGTGAAG 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 531 GCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAGAGGTTGTGAAG 590
Query 481 CAGAGAATGCAGACCGGACAGTTTACATCAGCCCCCAATGCTGTTCGACTTATTGCATCA 540
|| ||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||
Sbjct 591 CAAAGAATGCAGACCGGACAGTTTACATCAGCTCCCAGTGCTGTTCGAATGATTGCATCA 650
Query 541 AAAGAGGGATTTAGGGGTCTTTATGCAGGATATCGGTCCTTCCTTTTGCGAGATTTGCCG 600
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 651 AAAGAGGGATTTAGGGGTCTCTATGCAGGATACCGGTCCTTCCTTTTGCGAGATTTGCCA 710
Query 601 TTTGATGCTATACAGTTCTGCATATATGAGCAGCTATGCTTGGGGTATAAAAAAGCAGCG 660
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 711 TTTGATGCTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCCGCG 770
Query 661 CGTAGAGACCTTAGTGATCCTGAGAACGCTCTAATCGGTGCCTTTGCTGGTGCTCTGACC 720
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 771 CGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTGGTGCTCTGACC 830
Query 721 GGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGGGATCAGCC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGGGATCAGCC 890
Query 781 AAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCT 950
Query 841 GCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGTTCAATCTTC 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 951 GCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGATCAATCTTC 1010
Query 901 TTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAATACGGTCAAA 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1011 TTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAATACGGTTAAA 1070
Query 961 GAAACCAAAGAGGAATAA 978
||||||||||| ||||||
Sbjct 1071 GAAACCAAAGAAGAATAA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5