BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888192

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39700.1 | Symbols:  | Heavy metal transport/detoxification ...   815    0.0  


> AT4G39700.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr4:18424265-18424906 FORWARD LENGTH=477
Length=477

 Score =  815 bits (441),  Expect = 0.0
 Identities = 465/477 (97%), Gaps = 0/477 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGTTGGAGGAACGTTGGAGTATATATCAGAGCTAATAGGGAATGGAGGAAGCCAT  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAGTTGGGGGAACGTTGGAGTATATATCAGAGCTAATAGGGAATGGAGGAAGCCAT  60

Query  61   AGTTATGGAAAGAGGAAGAAGAAGAAGCTGTTTCAAACAGTAGAGCTCAAAGTTAGAATG  120
            ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct  61   AGTTATGGAAAAAGGAAGAAGAAGAAGCAGTTTCAAACAGTAGAGCTCAAAGTTAGGATG  120

Query  121  GATTGTGATGGTTGTGTCCTCAAAATCAAAAACTCTCTTTCTTCCCTAAAAGGAGTGAAA  180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  GATTGTGATGGTTGTGTCCTCAAAATCAAAAACTCTCTTTCTTCTCTAAAAGGAGTGAAA  180

Query  181  ACAGTGGAGGTAAACAAGAAGCAACAGAAGGTGACAGTGAGTGGCTATGCGGATGCGAGC  240
            || |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  ACGGTGGAGATAAACAAGAAGCAACAGAAGGTGACAGTGAGTGGTTATGCGGATGCGAGC  240

Query  241  AAGGTGCTGAAGAAGGCTAAAGCGACGGGGAAGAAAGCCGAGATATGGCCGTACGTACCG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAGGTGCTGAAGAAGGCTAAAGCGACGGGGAAGAAAGCCGAGATATGGCCGTACGTACCG  300

Query  301  TACAACTTGGTGGCTCAGCCGTACATAGCTCAGGCTTATGATAAGAAAGCACCGCCTGGT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TACAACTTGGTGGCTCAGCCGTACATAGCTCAGGCTTATGATAAGAAAGCACCGCCTGGT  360

Query  361  TACGTCAGAAAAGTGGACCCAAACGTCACCACCGGGACAATGGCCGTTTACTACGATGAC  420
            |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  361  TACGTCAGAAAAGTTGACCCAAACGTCACCACCGGGACGATGGCTGTTTACTACGATGAC  420

Query  421  CCTTCTTATACTTCTTTGTTTAGTGATGATAATCCTAACGCTTGCTCTATTATGTAG  477
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  421  CCTTCTTATACTTCTTTGTTTAGTGATGATAATCCTAATGCTTGCTCTATTATGTAG  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5