BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888198
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39770.1 | Symbols: TPPH | Haloacid dehalogenase-like hydrol... 1687 0.0
AT2G22190.1 | Symbols: TPPE | Haloacid dehalogenase-like hydrol... 806 0.0
> AT4G39770.1 | Symbols: TPPH | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr4:18448980-18451293 REVERSE
LENGTH=1283
Length=1283
Score = 1687 bits (913), Expect = 0.0
Identities = 1004/1049 (96%), Gaps = 2/1049 (0%)
Strand=Plus/Plus
Query 1 ATGGTAAGATTCATAGAAgaaaacacaaaacttgtggaaaaagaaacaggaaacaaatca 60
||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 76 ATGGTTAGATTCATAGAAGAAAACACAAAACTTGTAGAAAAAGAAACCGGGAACAAATCA 135
Query 61 aacaacgatgtaacaacaacGAAGAAGAAAGTTCTTCAAGATCTTAGTATCAACAATGGA 120
||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct 136 AACAACGATGTAACAACAACGAAGAAGAAAGCTCTTCAAGATATCATTATCAACAATGGA 195
Query 121 GGAGGATTAATCAATTCATGGGTTGATTCAATGAGAGCTTGTTCTCCTACTCACCTTAAA 180
| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 196 GTAGGATTGATCAATTCATGGGTTGATTCAATGAGAGCTTGTTCCCCTACTCATCTTAAA 255
Query 181 TCTTTGTTGAAACAAAGCTCTTGGCTCACAGAACATCCATCAGCTTTGGATATGTTTGAA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 256 TCTTTGTTGAAACAAAGCTCTTGGCTCACGGAACATCCATCAGCTTTGGATATGTTTGAA 315
Query 241 GAGATTCTTCACCTTTCTGAAGGAAAACAAATCGTTATGTTCTTGGATTATGATGGCACT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GAGATTCTTCACCTTTCTGAAGGAAAACAAATCGTTATGTTCTTGGATTATGATGGCACT 375
Query 301 TTATCTCCCATTGTTGATGATCCAGATCGAGCTTTCATGTCTAAG-AAGATGAGAAGAAC 359
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 376 TTATCTCCCATTGTTGATGATCCAGATCGAGCTTTCATGTCT-AGAAAGATGAGAAGAAC 434
Query 360 TGTGAGGAAACTAGCAAACTGTTTCCCGACGGCCATAGTTAGTGGGAGATGCAGAGAAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 435 TGTGAGGAAACTAGCAAACTGTTTCCCGACGGCCATAGTTAGTGGGAGATGCATAGAAAA 494
Query 420 GGTTTATAATTTTGTGAAACTAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACAT 479
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 GGTTTATAACTTTGTAAAACTAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACAT 554
Query 480 CAAAGGACCAGAGCAAGGGTCCAAATTTGAGGAAGTAAGATTTGATAGTAAATCTCTTCT 539
|||||||||||||||||||||||||| |||| || | | |||||||||||||||||
Sbjct 555 CAAAGGACCAGAGCAAGGGTCCAAATATGAGCAAATTTTACAGGATAGTAAATCTCTTCT 614
Query 540 TTGCCAACCAGCTACAGAGTTCCTCCCCATGATCGACGAGGTTTATAAAAAATTAGTGGA 599
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 615 TTGCCAACCAGCTACAGAGTTCCTCCCCATGATCGACGAGGTTTATCATAAATTAGTGGA 674
Query 600 GACAACAAAATTTACTCCCGGAGCCCAAGTAGAGAACAATAAATTTTGTGTCTCGGTTCA 659
|| |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 675 GAAAACAAAATCTACTCCCGGAGCCCAAGTAGAGAACAACAAATTTTGTGTCTCTGTTCA 734
Query 660 CTTCCGACGTGTCGATGAAAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAAT 719
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CTTCCGACGCGTAGATGAAAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAAT 794
Query 720 GAAGGACTACCCTAAGCTCCGTCTTACTCAAGGAAGAAAAGTTTTAGAAGTTCGTCCTAT 779
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 795 GAAAGACTACCCTAAGCTCCGTCTTACTCAAGGAAGAAAAGTTTTGGAGGTTCGTCCGAT 854
Query 780 TATTAAATGGGATAAAGGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAA 839
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TATTAAATGGGACAAAGGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAA 914
Query 840 TTGTACCGACGTGTTCCCTCTTTATATCGGAGATGATCGCACAGACGAAGATGCATTTAA 899
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 915 TTGTACCGACGTTTTCCCTCTTTATATCGGAGATGATCGCACCGACGAAGATGCATTCAA 974
Query 900 GATATTGAGAGAAAGAAGACAAGGTCTTGGCATTCTTGTATCTAAATTTCCAAAGGAGAC 959
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GGTATTGAGAGAACGAAGACAAGGTCTTGGCATTCTTGTATCTAAATTTCCAAAGGAGAC 1034
Query 960 TAGCGCGTCTTATTCACTGCAAGAACCCGATGAGGTTATGGAGTTCTTGCAACGTTTAGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TAGCGCGTCTTATTCACTGCAAGAACCCGATGAGGTTATGGAGTTCTTGCAACGTTTAGT 1094
Query 1020 GGAATGGAAACAATTGAGATCTGGAGCAT 1048
|||||||||||||||||||||||||||||
Sbjct 1095 GGAATGGAAACAATTGAGATCTGGAGCAT 1123
> AT2G22190.1 | Symbols: TPPE | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr2:9433765-9436544 REVERSE
LENGTH=1259
Length=1259
Score = 806 bits (436), Expect = 0.0
Identities = 791/959 (82%), Gaps = 37/959 (4%)
Strand=Plus/Plus
Query 87 GAAAGTTCTTCAAGATCTT-AGTATCAACAATGGAGGAGGATTAATCAA-TTCATGGGTT 144
|||||||||||| ||| || || ||||||| ||||||||| | || || |||||||||
Sbjct 173 GAAAGTTCTTCATGATTTTCAG-ATCAACAGCGGAGGAGGACTGAT-AAGATCATGGGTT 230
Query 145 GATTCAATGAGAGCTTGTTCTCCTACTCACCTTAAAT-CTTTGTTGAAACAAAGC-TCTT 202
||||| |||||||||||||||||||||| || ||||| ||| | | | || | | ||
Sbjct 231 GATTCTATGAGAGCTTGTTCTCCTACTCGCCCTAAATCCTTCAAT--AGCCAATCTTGTT 288
Query 203 GGCTCACA-GAACATCCATCAGCTTTGGATATGTTTGAAGAGATTCTTCACCTTTCTGAA 261
|| | | | ||||||||||| |||||| | ||||| ||||| || ||||| ||||||
Sbjct 289 GGATTA-AGGAACATCCATCTGCTTTGAACATGTTCGAAGAAATACTTCATAAATCTGAA 347
Query 262 GGAAAACAAATCGTTATG-TTCTTGGATTATGATGGCACTTTATCTCCCATTGTTGATGA 320
||||||||||| |||||| ||||| ||||||||||| ||| | |||||||||||||||||
Sbjct 348 GGAAAACAAATAGTTATGTTTCTT-GATTATGATGGTACTCTCTCTCCCATTGTTGATGA 406
Query 321 TCCAGATCGAGCTTTCATGTCTAAGAAGATGAGAAGA-ACTGTGAGGAAACTAGCAAACT 379
||| ||||||||||||||||| ||||||||| ||| | |||||||||||||| ||||| |
Sbjct 407 TCCTGATCGAGCTTTCATGTCCAAGAAGATGCGAA-ATACTGTGAGGAAACTTGCAAAGT 465
Query 380 GTTTCCCGACGGCCATAGTTAGTGGGAGATGCAGAGAAAAGGTTTATAATTTTGTGAAAC 439
|||| || || |||||||||||||||||||||||||| ||||||| || ||||||||||
Sbjct 466 GTTTTCCAACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGAAAT 525
Query 440 TAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACATCAAAGGACCAGAGCAAGGGT 499
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 526 TAACTGAGTTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAGAGCAAGGAT 585
Query 500 CCAAATTTGAGGAAGTAAGATTTGATAGTAAATCTCTTCTTTGCCAACCAGCTACAGAGT 559
| ||| | | ||| || | || | | | ||||||||||| ||||| || || || |
Sbjct 586 CTAAA--T-A-CAAG-AA-A---GAAAATCAGTCTCTTCTTTGTCAACCCGCAACTGAAT 636
Query 560 TCCTCCCCATGATCGACGAGGTTTATAAAAAATTAGTGGAG-ACAACAAAATTTACTCCC 618
||||||| |||| ||||||||||||||||| |||| ||| || || ||| | |||
Sbjct 637 TCCTCCCGGTGATAAACGAGGTTTATAAAAAACTAGTCGAGAAC-ACTCAATCGATTCCA 695
Query 619 GGAGCCCAAGTAGAGAACAATAAATTTTGTGTC-TCGGTTCACTTCCGACGTGTCGATGA 677
||||| |||| |||||||| |||||||||| | || |||||||| ||| | || || ||
Sbjct 696 GGAGCGAAAGTTGAGAACAACAAATTTTGTG-CGTCTGTTCACTTTCGATGCGTAGAAGA 754
Query 678 AAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAATGAAGGACTACCCTAAGCT 737
|||||| |||||||| ||||| | |||||||||||||| ||||| | ||||| |||||
Sbjct 755 AAATAAATGGAGTGACTTGGCCCATCAAGTTCGATCAGTCTTGAAGAATTACCCCAAGCT 814
Query 738 CCGT-CTTACTCAAGGAAGAAAAGTTTTAGAAG-TTCGTCCTATTATTAAATGGGATAAA 795
| | ||||| |||||||||||||| || | || ||||||| || ||||| |||||||||
Sbjct 815 -CATGCTTACCCAAGGAAGAAAAGTATT-GGAGATTCGTCCAATCATTAAGTGGGATAAA 872
Query 796 GGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAATTGTACCGACGTGTTC 855
|||||||||||||||||||| ||||| ||||| ||||| | |||||||||||| || ||
Sbjct 873 GGCAAAGCACTCGAGTTTTTGTTAGAATCACTAGGATATGATAATTGTACCGATGTTTTT 932
Query 856 CCTCTTTATATCGGAGATGATCGCACAGACGAAGATGCATTTAAGATATTGAGAGA-AAG 914
||| | ||||| ||||||||||| || |||||||| || ||||||||| ||||||| ||
Sbjct 933 CCTATATATATTGGAGATGATCGTACCGACGAAGACGCCTTTAAGATACTGAGAGACAAA 992
Query 915 AAGACAAGGTCTTGGCATTCTTGTATCTAAATTTC-CAAAGGAGACTAGCGCGTCTTATT 973
|| |||||||||||| |||||||| || |||| | |||||||||||| || |||||||
Sbjct 993 AA-ACAAGGTCTTGGAATTCTTGTGTCCAAATA-CGCAAAGGAGACTAATGCTTCTTATT 1050
Query 974 CACTGCAAGAACCCGATGAGGTTATGGAGTTCTT-GCAACGTTTAGTGGAATGGAAACA 1031
| ||||||| || ||||||||||||| || || | ||||||| ||||||||||||||
Sbjct 1051 CTTTGCAAGAGCCAGATGAGGTTATGGTTTTTTTAG-AACGTTTGGTGGAATGGAAACA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5