BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888200
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39790.1 | Symbols: | Protein of unknown function (DUF630 a... 2998 0.0
> AT4G39790.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr4:18462190-18464824 REVERSE LENGTH=2340
Length=2340
Score = 2998 bits (1623), Expect = 0.0
Identities = 1881/2001 (94%), Gaps = 36/2001 (2%)
Strand=Plus/Plus
Query 1 ATGGGTCATTCGATATTGGAGAAAATGGGATGTTCAAACTCGAAAACATCGATGAAGAAG 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 241 ATGGGTCATTCGATATTGGAGAAAATGGGATGTTCAAACTCGAAAGCATCGATGAATAAG 300
Query 61 AAGAACGAGCCACTTCATCTATGTAAAGAAAGGAAGAGATTTGTCAAACAAGCTATGGAT 120
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAACGAGCCGCTTCATCTATGCAAAGAAAGGAAGAGATTTGTCAAACAAGCTATGGAT 360
Query 121 TCCAGATGTGCTTTAGCCGCTGCACACGTGTCATACATCCGTTCACTCCGTAACATCGGA 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TCCAGATGTGCTTTAGCCGCTGCACACGTGTCTTACATCCGTTCACTCCGTAACATCGGA 420
Query 181 GCTTGTCTCCGTCAATACGCGGAGGCGGAGACGGCTGATGAATTATCTCCGTCGTTAACC 240
|||||||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 421 GCTTGTCTTCGTCAATACGCGGAGGCGGAGACTGCTCATGAATCATCTCCGTCGTTAACC 480
Query 241 GCCACTGAGCCTGAGAAATCTCCTTCTCATAACTCCTCTTACCGTGACGATTCGGTTGAC 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 GCCACTGAGCCTGAGAAATCTCCTTCTCATAACTCCTCTTACCCTGACGATTCGGTTGAC 540
Query 301 TCGCCACTGAGTCATTACTCGAATCCAAACCCTAACCCTAAACCCCTTTTCAATCTAAGC 360
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCGCCACTGAGTCATAACTCGAATCCAAACCCTAACCCTAAACCCCTTTTCAATCTAAGT 600
Query 361 TACATGAAGACGGAGACAGCTAATTCTACTGTGACTTTCACGATTAACCCTCTGAGCGAC 420
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 601 TACATGAAGACGGAGACGGCTAGTTCTACTGTGACTTTCACTATTAACCCTCTGAGCGAC 660
Query 421 GGTGAAGACGATCTGGAGGAGACAATGCCGGCG-TTT-T-CTCCTCCTCCGCCGCGTCCT 477
||||| ||||||||||| | ||||||||||||| ||| | ||||||||||||||||||||
Sbjct 661 GGTGATGACGATCTGGAAGTGACAATGCCGGCGTTTTCTCCTCCTCCTCCGCCGCGTCCT 720
Query 478 CGCCGGCCAGAGACGTCTTCTTGGGACTATTTCGACACAAGTGACGATTTTGATAGCTTT 537
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 CGCCGGCCAGAGACGTCTTCTTGGGACTATTTCGACACTTGTGACGATTTTGATAGCTTT 780
Query 538 AGATTTGTAGGGCTAAGTGAACAAA-CG-GA--GATA--GATTGTGATGCAGCAGTTATA 591
||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 781 AGATTTGTAGGGCTAAGTGAACAAACCGAGATTGATAGTGAATGTGATGCAGCAGTTATA 840
Query 592 GGATTAGAGAAGA-T--TAGTCAAGGGAATGTAGCAAAATCTGGTTCAGTGTCATTGCAA 648
||||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 841 GGATTAGAGAAGATTACTAGTCAAGGGAATGTAGCAAAATCTGGTTCAGAGACATTGCAA 900
Query 649 GACTCGAGTTTTAAAACAAAGCAGAGGAAACAGAGTAGTGAAGATGATGATGAAGCTGGA 708
|||||||||||||||||||||||||||||||||||| | | ||| | | | |
Sbjct 901 GACTCGAGTTTTAAAACAAAGCAGAGGAAACAGAGT--T---G-TGA--A-G-A--T--- 945
Query 709 AATGGTGAAAGAGAAGATCCATCAGAGTTTATCACACATAGAGCTAAAGACTTTGTGTCA 768
|||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 946 AATGATGAAAGAGAAGATCCATCGGAGTTTATCACACATAGAGCCAAAGACTTTGTGTCG 1005
Query 769 AGTATGAAAGATATAGAGCATAAGTTCTTTAGAGCTTCTGAATCTGGAAGAGAAGTTTCA 828
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AGTATGAAAGATATAGAACATAAGTTCTTTAGAGCTTCTGAATCTGGAAGAGAAGTTTCA 1065
Query 829 AGAATGCTTGAAGCTAACAAAATCAGAGTCGGATTCGCGGATATGACAGGAAAGGGAAGT 888
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1066 AGAATGCTTGAAGTTAACAAAATCAGAGTCGGATTCGCCGATATGACAGGAAAGGGAAAT 1125
Query 889 TCAATAGCGTGTCTTGCAGCTTTGAAGCAAGCTTGTTGTAGAGGGAAGAGTTATTCACCA 948
|||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1126 TCAATAGCGTTTCTTGCAGCTTTGAAGCGAGCTTGTTGTAGAGGGAAAAGTTATTCACCA 1185
Query 949 GTTTCTCAAGAGCCTTTGAGTCATCAAGTTACTAAAGTCATTGTGTGGAAGAGAACATCG 1008
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GTTTCTCAAGAGCCATTGAGTCATCAAGTTACTAAAGTCATTGTGTGGAAGAGAACATCG 1245
Query 1009 TCTTCAAGATCCTCGACATCTAGAAATCCGTTGATTCAGACAACTAAAGAAGATCATGAT 1068
|| ||||||||||| || ||||||||||||||||| |||||| | ||||||||||| |||
Sbjct 1246 TCGTCAAGATCCTCCACTTCTAGAAATCCGTTGATCCAGACATCAAAAGAAGATCACGAT 1305
Query 1069 GATGAAAGTGGAAGTGATTTCATCGAAGAGTTTTGTATGATCTCAGGAAGTCACTCTTCT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 GATGAAAGTGGAAGTGATTTCATCGAAGAGTTTTGTATGATCTCAGGAAGTCACTCTTCT 1365
Query 1129 TCGCTTGATCGATTATACGCTTGGGAGAGAAAACTCTATGATGAAGTCAAGGCGAGTGAG 1188
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TCGCTTGATCGGTTATACGCTTGGGAGAGAAAACTCTATGATGAAGTCAAGGCGAGTGAG 1425
Query 1189 ATGATTAGGAAAGAGTATGATCGAAAATGCGAGCAGCTAAGGAACCAATTTGCAAAGGAT 1248
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1426 ATGATTAGGAAAGAGTATGATCGAAAATGCGAGCAGCTAAGGAACCAATTCGCAAAGGAT 1485
Query 1249 CACAGCGCTAAATCGATGGATAAAACAAGAGCAGCTGCTAAAGATCTTCATTCAAGAATC 1308
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 CACAGTGCTAAATCGATGGATAAAACAAGAGCAGCTGCTAAAGATCTTCATTCAAGAATC 1545
Query 1309 AGAGTCGCGATTCAATCTGTTGATTCAATATCTAAGCGGATTGAGAGAATCAGAGACGAT 1368
||||||||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 1546 AGAGTCGCGATTCAATCTGTTGAATCGATTTCAAAGCGGATTGAGAGAATCAGAGACGAT 1605
Query 1369 GAGCTCCAGCCACAGCTCTTAGAATTTCTTCAAGGGTTGATAAGAATGTGGAAAGCAATG 1428
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1606 GAGCTCCACCCACAGCTCTTAGAGTTTCTTCAAGGGTTGATAAGAATGTGGAAAGCGATG 1665
Query 1429 CTTGAATGTCATCATTCACAGTACATCACCATTTCATTGGCTTACCATTGTCGAAATTCC 1488
||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1666 CTTGAATGTCATCATACACAGTACATTACCATTTCATTGGCTTACCATTGTCGACATTCC 1725
Query 1489 TCCAAAACAGCACCCGAGA-TCG-CGCTCAAGAGACGGATTTTGTCAGAACTTCTAGAAG 1546
||||||||||||| ||| | | | | || ||||| ||||||||| | || ||||||||||
Sbjct 1726 TCCAAAACAGCACACGAAAGT-GTC-CTTAAGAGGCGGATTTTGGCGGAGCTTCTAGAAG 1783
Query 1547 AAACAGAGTGTTTTGGTCTAAGCTTTGTAGATTTGGTTAACAGTATGACTTGTTACGTGG 1606
|||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||
Sbjct 1784 AAACAGAGTGTTTTGGTCTAAGCTTTGTAGATTTGGTTCACAGTATGGCTTCTTATGTGG 1843
Query 1607 AAGCTGTCAATGGTTGGCTTCACAACTGTGTCTTGCTCCCTCAAGAACGTTCCTCTTTAA 1666
||||| | ||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 1844 AAGCTCTGAATGGTTGGCTTCACAACTGTGTCTTGCTCCCTCAAGAACG-T--TCTACAA 1900
Query 1667 GAAACCGTAGACCGTGGTCCCCTCGACGTGTCCTGGCTCCACCGATATTCGTTCTGTGTA 1726
||||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1901 GAAACCGAAGACCATGGTCCCCACGTCGTGTCCTGGCTCCACCGATATTCGTGCTGTGTC 1960
Query 1727 GGGACTGGTCTGCTGGGATGAAAACACTGCCGTCTGATGAACTTAGCGGGTCAATCAAGG 1786
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GGGACTGGTCTGCAGGGATCAAAACACTGCCGTCTGATGAACTTAGCGGGTCAATCAAGG 2020
Query 1787 GGTTTTCCTTGGATATGGAGATGTTGGGGGAAGAAAAAAGCGGTTCGGTGTTGGTTTCGG 1846
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2021 GGTTTTCCTTGGATATGGAGATGTTGGGGGAAGAAAAAGGCGGTTCACTGTTGGTTTCGG 2080
Query 1847 ATTTGTCGACTGTGCATTCGAGTTTGGCGAAGCTTCTAGAGAGATTGAAAAAGTTTTCGG 1906
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2081 ATTTGTCGAGTGTGCATTCGAGTTTGGCGAAGCTTCTAGAGAGATTAAAAAAGTTTTCGG 2140
Query 1907 AAGCTTCTTTGAAAATGTATGAAGATGTAAAGGTGAAAAGTGAAGCAGCTAGAGTTGCTT 1966
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 AAGCTTCTTTAAAAATGTATGAAGATGTAAAGGTGAAAAGTGAAGCAGCTAGAGTTGCTT 2200
Query 1967 ACACTAATAA-TAATTTCTAA 1986
|||||||||| ||||| ||||
Sbjct 2201 ACACTAATAAATAATT-CTAA 2220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98393068200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5