BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888201

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39795.1 | Symbols:  | Protein of unknown function (DUF581) ...   472    2e-132


> AT4G39795.1 | Symbols:  | Protein of unknown function (DUF581) 
| chr4:18466565-18467449 FORWARD LENGTH=561
Length=561

 Score =  472 bits (255),  Expect = 2e-132
 Identities = 356/401 (89%), Gaps = 22/401 (5%)
 Strand=Plus/Plus

Query  1    ATGTTGATAGGGAGTCGACCACGGCCTCAAATGCAGAGAACAGCAAGCATAACGAGGATC  60
            |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  57   ATGTTGTTAGGGAATCGACCACGGCCTCAAATGCAGAGAACAGCAAGCATAACGAGGATC  116

Query  61   ACCATCGAGGTTGATGATGATCAAACCGCCGGCCAAGACACTGACGTTG-CTATGACGGT  119
            || ||||| ||||||| |||||| ||||||||||||||| |||||| || ||||||||||
Sbjct  117  ACTATCGAAGTTGATGGTGATCAGACCGCCGGCCAAGACTCTGACG-TGTCTATGACGGT  175

Query  120  GGTTGACGGCGGAGATAATTACGACCAGCGATTCTTGGGGATGTTGTCGCCGGTAAATCA  179
            ||||||||||||||| ||||||| |||||| |||         |||||||||||||||||
Sbjct  176  GGTTGACGGCGGAGAAAATTACGCCCAGCGGTTC---------TTGTCGCCGGTAAATCA  226

Query  180  CCGGAGGAACGAGAGAAAAGACGGTGGGCGATCATCACCGTCGTCGTTGTCCTCTTTTCT  239
            || |||||||||||||||| |||||||| |||| ||| |  ||||   |   ||||||||
Sbjct  227  CCAGAGGAACGAGAGAAAATACGGTGGGAGATCCTCA-C--CGTC---G---TCTTTTCT  277

Query  240  TGGAAACTGTGGATTTTGCAAACGCCGT-TTAGCTCCGGGTCGTGATATTTACATGTACA  298
            || ||||||||| |||||||||||| || || ||||||||||||||||||||||||||||
Sbjct  278  TGTAAACTGTGGCTTTTGCAAACGCGGTCTT-GCTCCGGGTCGTGATATTTACATGTACA  336

Query  299  AAGGGGACGCAGCGTTTTGTAGCATAGAATGCAGAGAACAGCAAATGGAGCAAGAGGAAG  358
            |||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct  337  AAGGGGACGCAGCGTTTTGTAGCATAGAATGCAGAGAACAGCAAATGGAGCACGACGAGG  396

Query  359  GCAAAACAAGAAACCGCGTCGTACTATCACCATCAAATTAA  399
            | ||||||||||||||||||||||||||||| ||||| |||
Sbjct  397  GGAAAACAAGAAACCGCGTCGTACTATCACCTTCAAAATAA  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5