BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888203
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39810.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1031 0.0
> AT4G39810.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr4:18474608-18475735 REVERSE
LENGTH=768
Length=768
Score = 1031 bits (558), Expect = 0.0
Identities = 636/675 (94%), Gaps = 0/675 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTCCAAACATTTCCCACCGAAATCGTCTTTTTCGATCTAGAAACAACCGTACCG 60
|||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct 1 ATGGCGGTCCAAACATTTCCCAACGAAATCGTCTTCTTCGATCTAGAAACAAACGTACCA 60
Query 61 AACAAAGTGGGGCAATATTTTCACATTTTAGAGTTTGGTGCGATCATCGTATGTCCAAGA 120
||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 61 AACAAAGCAGGGCAACATTTTCACATACTAGAGTTTGGGGCGATCATCGTATGTCCAAAA 120
Query 121 AAACTCGAGGAGCTAGAGAGCTTCACAACGCTTATACAACCTAAAGACTTGTCAGTGGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AAACTCGAGGAGCTAGAGAGCTTCACAACGCTTATACAACCTAAAGACTTGTCGGTGGTC 180
Query 181 TCAATAAGGTCGTCTAGGTCTGATGGGATCACAAGGGCTAAGGTTACAAACGCACCAAGT 240
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 181 TCAATAAGGTCGTCTAGGTCAGATGGGATCACCAGGGCTAAGGTTACGAACGCACCAAGT 240
Query 241 TTTGAAGATGTGGCTGAGAAGATCTATGGTTTGTTGAACGGTCGGATTTGGGCAGGTCAT 300
|||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 241 TTTGAAGACGTGGCTGAGAAAATCCATGGTTTGTTGAACGGTAGGATTTGGGCAGGTCAT 300
Query 301 AACATTAGAAGATTCGATTGCATTAGGATCAAAGAAGCTTTCGCTGAGATCGGTAAAGCT 360
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACATTAGAAGATTTGATTGCGTTAGGATCAAAGAAGCTTTCGCTGAGATCGGTAAAGCT 360
Query 361 GCCCCTGAACCCTCAGGGATCATTGATTCTTTGGGGTTATTAAGTGACAAGTTTGGCAAA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGCCTGAACCCTCAGGGATCATTGATTCTTTGGGGTTATTAAGTGACAAGTTTGGCAAA 420
Query 421 AGAGCTGGTAACATGAAGATGGCAAGTTTGGCAGCGTATTTTGGTCTTGGAGTGCAAAAG 480
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 421 AGAGCTGGTAACATGAAGATGGCAAGTTTGGCTGCCTATTTTGGTCTTGGAGTTCAAAAG 480
Query 481 CACAGGAGTCTCGATGATGTTAGAATGAACTTAGAGGTCCTCAAGCACTGCGCAACAGTT 540
||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||||
Sbjct 481 CACAGGAGTCTCGATGATGTTCGAATGAATTTAGAGGTCCTCAAGCATTGTGCAACAGTG 540
Query 541 CTTTTCTTGGAATCTACACTTCCCAATCAATTGGAAGGAAAATGGCAAAGTTCTTCAAAG 600
||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||
Sbjct 541 CTTTTCTTGGAATCTACACTTCCCAATCATTTGGAAGGAAAATGGCACACTTCTTCTAAG 600
Query 601 ATCATGACAAGAAGTCGAAGTAATTACCAAATAGCCCAAAGGGCAATGCCTTACTCAAAG 660
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 601 ATTATGACAAGAAGTCGAAGGAATTACCAAATAGCCCAAAGGGCAATGCCTTACTCGAAG 660
Query 661 GGTAGTCTCGGGAAG 675
|||||||||| ||||
Sbjct 661 GGTAGTCTCGAGAAG 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5