BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888226
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2815 0.0
> AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:18543893-18547523
REVERSE LENGTH=2528
Length=2528
Score = 2815 bits (1524), Expect = 0.0
Identities = 1711/1800 (95%), Gaps = 18/1800 (1%)
Strand=Plus/Plus
Query 103 TGTGCTGCACCTGGTTCCAAGACATTTCAGCTGCTTGAGATAATACATGAATCATCAGAA 162
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 636 TGTGCTGCACCTGGTTCCAAGACATTTCAGCTGCTTGAAATAATACATGAATCATCAGAA 695
Query 163 CCAGGATCTCTACCTAATGGAATGGTGGTGGCGAATGATGTTGATTATAAAAGATGTAAC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 696 CCAGGATCTCTACCTAATGGAATGGTGGTGGCGAATGATGTTGATTATAAAAGATCTAAT 755
Query 223 CTTCTTATTCACCAAACGAAAAGAACATGTACAACTAACTTGATGGTCACTAACAACGAA 282
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 756 CTTCTTATTCACCAAACGAAAAGAACATGTACGACCAATTTGATGGTCACTAACAACGAA 815
Query 283 GGTCAACATTTCCCCAGCTGCAACACCAAGAGGACCTTGTCCGTAGCATCTGAGATTAAT 342
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 816 GGTCAACATTTCCCCAGTTGCAACACCAAGAGAACCTTGTCTGTAGCATCTGAGACTAAT 875
Query 343 CCTCATCCCATTGATCAGCTTCTTTTTGATCGTGTCTTATGTGATGTCCCGTGTAGTGGT 402
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CCTCATCCCATCGATCAGCTTCTTTTTGATCGTGTCTTATGTGATGTCCCGTGTAGTGGT 935
Query 403 GATGGTACTCTGCGCAAGGCTCCAGACATATGGCGAAGA---AATTCTGGATCTGGCAAT 459
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 936 GATGGTACTCTGCGCAAGGCTCCAGACATATGGCGAAGATGGAATTCTGGATCTGGCAAT 995
Query 460 GGACTTCATAGTCTACAGGTTGTGCTTGCCATGAGA---TTATCTCTGCTAAAAGTTGGT 516
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 996 GGACTTCATAGTCTACAGGTTGTGCTTGCCATGAGAGGTTTATCTCTGCTAAAAGTTGGT 1055
Query 517 GGGCGAATGATATACTCCACCTGCTCAATGAACCCAATTGAAGATGAAGCCGTTGTTGCT 576
||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1056 GGGAGAATGGTATACTCAACCTGCTCAATGAACCCAATTGAAGATGAAGCTGTTGTTGCT 1115
Query 577 GAAATTCTGAGGAGATGTGGATGCTCTGTTGAGCTTGTAGATGTCTCAGATAAGCTTCCT 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 GAAATTCTGAGGAGATGTGGATGCTCTGTTGAGCTTGTAGATGTCTCAGATAAGCTTCCA 1175
Query 637 GAACTTATTAGAAGACCAGGTCTTACGAAATGGAAGGTGCATGATAGAGGTGGCTGGTAT 696
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1176 GAACTTATTAGAAGACCAGGTCTTACGAAATGGAAGGTGCATGACAGAGGTGGCTGGTAT 1235
Query 697 AGATCTTACAAAGATGTTCCAAAGTCACAGAGAGACGGAGTTCTTAGGAGCATGTTTCCT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 AGATCTTACAAAGATGTTCCAAAGTCACAGAGAGACGGAGTTCTTAGGAGCATGTTTCCT 1295
Query 757 TCTGGTAAAAGTGATAAAGACTCAACGGGTGGCGGAAACAGCTATGAAGAAATGGCTTAT 816
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1296 TCTGGTAAAAGTGATAAAGACTCATCGGGTGGCAAAAACAGCTATGAAGAAATGGCTTCT 1355
Query 817 ATCTCTTCTGATGAATCAGCCGTGGAAGTCTGTGATCTTCCCCTTGAACGTTGTATGAGG 876
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1356 ATCTCTTCTGATGAATCAGCCGAAGAAGTCTGTGATCTTCCCCTTGAACTTTGTATGAGG 1415
Query 877 ATACTGCCTCATGATCAAAACACTGGGGGATTTTTCATTGCAGTCCTTCACAAAGTTTCA 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 ATACTGCCTCATGATCAAAACACTGGGGGATTTTTCATTGCAGTCCTTCACAAAGTTTCA 1475
Query 937 CCTTTACC--A-TTTCAGGATAAAATAAATAATAGAAGGAATTCGTTTACTAGAAACAAC 993
|||||||| | |||||||| ||| ||| | | | |||||||| || |||||||||||||
Sbjct 1476 CCTTTACCAGACTTTCAGGAGAAAGTAACTCAGAAAAGGAATTTGTCTACTAGAAACAAC 1535
Query 994 ATCAACTCATCTGAGAAG---TCTTCGTATGAAGCAGTATCTGACACTGTGGTTACTAAA 1050
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1536 ATCAACTCATCTGAGAAGTCTTCTTCGTATGAAGCAGTATCTGACACTGTGGTTACTAAA 1595
Query 1051 CCTGAAGAGGGTGCAGAGGAAATAGTTTTAGAAGCAACAGTTTCAGAGAATGGCTTTAAT 1110
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1596 CCTGAAGAGGGTACAGAGGAAATAGTTTTAGAAGCAACAGTTTCAGAGAATGGCTTTGAG 1655
Query 1111 CCGCCTGAGAAGGAAAGCACCTGCG-ATGAAGGTATCGTAGAATTGGTTCAAAAACTTGA 1169
||||| |||| |||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 1656 CCGCCGGAGATGGAAAGCACCTG-GAATGAAGGTATCGTAGAATTGGCTCAAAAACTTGA 1714
Query 1170 TGATATGGGAGGCAAGAGAGAAGTACCGTCACTGCAAGGGAAGTGGAAAGGCCTTTACCC 1229
|||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1715 TGATATAGAAGGCAAGAGAGAAGTACCATCAATGCAAGGGAAGTGGAAAGGCCTTTACCC 1774
Query 1230 TGTTGTTTTCTTGAGAGATAAAACAGTGATCGACGGGATCAAGACATTTTACGGCATCAA 1289
||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||
Sbjct 1775 TGTTGTTTTCTTGAGAGATCAAACAGGGATCAACGGGATCAAGACATTTTACGGCATTAA 1834
Query 1290 AGATGAATCGTTTCCGCTGTATGGTCATCTCGTGACTAGAAACAGCGACATAAGCAGCCA 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 AGATGAATCGTTTCCGCTGTATGGTCATCTCGTGACTAGAAACAGCGACATAAGCAGCCA 1894
Query 1350 CGGAAACGTGAAAAGGATTTACTATGTTTCGAAAGCAGTTAAAG-ATGTTCTTGAGCTTA 1408
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1895 CGGAAACGTGAAAAGGATTTACTATGTTTCGAAAGCAGTT-AAGAATGTTCTTGAGCTTA 1953
Query 1409 ATTTTGCAGTTGGGAAGCCGCTTAAGATTTCCTCTGTTGGTCTCAAGATCTTTGAGAAAC 1468
|||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct 1954 ATTTTGCAGTTGGGAAGCCGCTCAAGATCTCCTCTGTTGGCCTCAAGATGTTTGAGAAAC 2013
Query 1469 AATCGGCAAAAGAATGTGAAGCCAACTGTTGCCCATTCCGAATAACGTCAGAGGGATTGC 1528
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2014 AATCTGCAAAAGAATGTGAAGCCAACTGTTGCTCATTCCGAATAACGTCAGAGGGATTGC 2073
Query 1529 CTGTGATCCTTCCGTACATGACCAAGCAAATACTTTATGCAACAATGGCGGATTTCAAGA 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 CTGTGATCCTTCCGTACATGACCAAGCAAATACTTTATGCAACAATGGCGGATTTCAAGA 2133
Query 1589 ATCTCCTGCAACACAAATCAATCAAGTTCCTAGATTTCATCCATCCACAGATTGGTGAGA 1648
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2134 ATCTCCTGCAACACAAATCAATCAAGTTTCTAGATTTCATACATCCACAGATTGGTGAGA 2193
Query 1649 AAGCAGCAAAACTAGCCTTGGGATCATGTGTTATGGTTCTCGTCGATGATACTCAGCTCG 1708
|||||||| |||||||||||||||| || |||||||||||||| |||||| |||||||||
Sbjct 2194 AAGCAGCAGAACTAGCCTTGGGATCTTGCGTTATGGTTCTCGTTGATGATTCTCAGCTCG 2253
Query 1709 GGTCAGAACC-TGTCAAAGTGAAAACATCAACAATAGCCATTGGATGCTGGAAGGGGAAG 1767
||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2254 GGTCAGAACAAT-TCAAAGTGAATTCATCAACAATAGCCATTGGATGCTGGAAGGGCAAG 2312
Query 1768 GCTAGCTTAACCGTTATGGTCACAACAGTGGATTGTCACCAACTTATCGAGAGACTTTCT 1827
||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 2313 GCTAGCTTAACCGTTATGGTCACAACAGTCGATTGTCACCAACTTATCCAGAGGCTTTCT 2372
Query 1828 GATAGAAGTAAAGAAGTAGAAATAGCTGAGAACTGTTTGAAGTCTGCTGAGACAGCTTGA 1887
||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 2373 GATAGAAGTAAAGAAAAAGAAAAAGCTGAGAACTGTTTCAAGACTGCTGAGACAGCTTGA 2432
Score = 145 bits (78), Expect = 2e-33
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1 GAACAAAGGATAGTGAAAGCTGAAGAGTGGGATTCGTTTATGGAGTTTCTTCGTAAGCCA 60
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 246 GAACAAAGAATAGTGAAAGCTCAAGAGTGGGATTCGTTTATGGAGTTTCTTCGTAAGCCA 305
Query 61 TTACCTGCTGCTTTCAGAGTTAATTCC 87
||||||||||||||||||||| |||||
Sbjct 306 TTACCTGCTGCTTTCAGAGTTTATTCC 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93423214245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5