BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888235
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT4G40070.1 | Symbols: | RING/U-box superfamily protein | chr4... 822 0.0
> AT4G40070.1 | Symbols: | RING/U-box superfamily protein | chr4:18576418-18577774
FORWARD LENGTH=1357
Length=1357
Score = 822 bits (445), Expect = 0.0
Identities = 552/603 (92%), Gaps = 10/603 (2%)
Strand=Plus/Plus
Query 1 ATGACACGCGTCGAGTGTTTTAA-CCGTCACGGTTGGATTATCTTCTTCCACGTGGCAAT 59
||||||||||||||||||||||| || |||| ||||||||| |||| |||||||||||
Sbjct 119 ATGACACGCGTCGAGTGTTTTAATCC-TCACCGTTGGATTA---TCTTACACGTGGCAAT 174
Query 60 CATCCTACAGAGCAAAGCCAATGCCCAATCATTCTCACCGAGGCCGCCTGATTTGCAACC 119
|||| ||||||||||||||||||||||||| ||||||||||| || || || |||||| |
Sbjct 175 CATCATACAGAGCAAAGCCAATGCCCAATCTTTCTCACCGAGTCCACCCGACTTGCAAAC 234
Query 120 GGGTGGTCACACTCCGTCGAAGACCACGGTCTTTACCGTTCTCGTCGCCCTCTTCTTCCT 179
| ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 235 --G-GGTCACACTCCGTCGAAGACCACCGTCTTCGCCGTTCTCGTAACCCTCTTCTTCCT 291
Query 180 CACCGGATTACTCTCCGTCTATATCCGCCATTGCACTCGCTCTAACCCCGATTCCTCCAC 239
|||||||||||||||||||||||| ||||||||| |||||||||| || |||||||||||
Sbjct 292 CACCGGATTACTCTCCGTCTATATTCGCCATTGCGCTCGCTCTAATCCTGATTCCTCCAC 351
Query 240 CAGATACTTCCGCCGCCGCGCTAACGACAACTTTTCACGGCGAGGCGGACTTGACAACGC 299
||||||||||||| ||| ||||||||| | ||||||||||||||| |||||||||||
Sbjct 352 CAGATACTTCCGCAACCGAGCTAACGACGGCAGTTCACGGCGAGGCGGTCTTGACAACGC 411
Query 300 CGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCACCGTTAAAGAATCGAAGATCGGATC 359
|||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||
Sbjct 412 CGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCTCTGTTAAAGAATCCAAAATCGGATC 471
Query 360 CAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTGGAAGATCATGAAACAGTGCGATT 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 472 CAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTAGAAGATCATGAAACAGTGCGATT 531
Query 420 GCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTATCGACGCTTGGCTTTACTCGCA 479
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 532 GCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTATCGATACTTGGCTTTACTCGCA 591
Query 480 CGCGACTTGCCCTGTTTGCAGATCTAATCTCACGGCGAAATCGGAA-AAATCCTGCGAAG 538
||| ||||||||||||||||||||||||||||| ||||||||| || ||| || |||| |
Sbjct 592 CGCAACTTGCCCTGTTTGCAGATCTAATCTCACCGCGAAATCG-AATAAACCCGGCGATG 650
Query 539 AAGACGACGGTGTTCCGATAGCAGCGATGAGAGATCACGTCGTGATTGATATTGAGACCG 598
||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct 651 AAGACGACGGTGTTCCGTTAGCAGCGATGAGAGACCACGTCGTGGTTGATATTGAGACCG 710
Query 599 TTG 601
|||
Sbjct 711 TTG 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5