BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888247
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1081 0.0
> AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17876535-17882569 FORWARD
LENGTH=4542
Length=4542
Score = 1081 bits (585), Expect = 0.0
Identities = 635/660 (96%), Gaps = 0/660 (0%)
Strand=Plus/Plus
Query 19 TTAGAGCAAGGGATGCGTCCGATTTCACGATGCTACAATCCAACCGTGTATTCGACAACA 78
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 3883 TTAGAGCAAGGGATGCGTCCGATTTCACGATGTTACAATCCAACCGCGTATTCGACAACA 3942
Query 79 ATGGGAGGAAACTTCCTCGCAGGTGCAGCCACAAGCAGCAAGCTATTCTCCAGAGGTTTC 138
|||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3943 ATGGGAAGAAGTTTCTTCGCAGGTGCAGCCACAAGCAGCAAGCTATTCTCCAGAGGTTTC 4002
Query 139 TCAGTCACAAAGCCAAAATCGAAAAGCGAATCTAAAGAAGTCGCTGCAAAGAAACATAGT 198
|||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 4003 TCAGTCACAAAGCCAAAATCTAAAACCGAATCTAAAGAAGTTGCTGCAAAGAAACATAGT 4062
Query 199 GACGCAGAGAGAAGGAGACGGCTTCGGATTAATTCCCAGTTTGCAACTCTCCGCACCATT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4063 GACGCAGAGAGAAGGAGACGGCTTCGGATTAATTCCCAGTTTGCAACTCTCCGCACCATT 4122
Query 259 CTTCCAAACTTGGTCAAACAGGATAAAGCATCTGTGCTTGGAGAGACTGTCAGGTACTTC 318
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 4123 CTTCCAAACTTAGTCAAACAAGATAAAGCATCTGTGCTTGGAGAGACTGTCAGGTACTTC 4182
Query 319 AACGAATTGAAAAAGATGGTTCAGGACATACCAACCACACCATCTTTAGAAGACAGCATG 378
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 4183 AATGAATTGAAAAAGATGGTTCAAGACATACCAACCACACCATCTTTAGAAGACAACTTG 4242
Query 379 AGATTGGGCCACTGTAATAACAACAGAGACTTGGCAAGAGTTGTGTTCAGTTGTAGCGAC 438
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 4243 AGATTGGACCACTGTAATAACAACAGAGACTTGGCAAGAGTCGTGTTCAGTTGTAGCGAC 4302
Query 439 AGAGATGGGCTAATGTCGGAGGTTGCAGAGTCGATGAAAGCAGTGAAAGCAAAGGCGGTG 498
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 4303 AGAGAAGGGCTAATGTCGGAGGTTGCAGAGTCAATGAAAGCAGTGAAAGCAAAGGCGGTG 4362
Query 499 AGAGCTGAGATCATGACAGTAGGTGGAAGAACCAAGTGTGCCTTGTTTGTTCAAGGTGTA 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4363 AGAGCTGAGATCATGACAGTAGGTGGAAGAACCAAGTGTGCCTTGTTTGTTCAAGGTGTC 4422
Query 559 AATGGGAATGAAGGATTGGTCAAGCTCAAGAAATCGTTGAAACCTGTAGTGAATGGTAAA 618
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 4423 AATGGGAATGAAGGATTGGTGAAGCTCAAGAAATCGTTGAAACTTGTAGTGAATGGTAAA 4482
Query 619 TCATCATCAGAGGCGAAAAACAACAACATTGGAGGATCGTTGTTGACTCAGCAGCAATGA 678
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 4483 TCATCATCAGAGGCGAAAAACAACAACAATGGAGGATCGTTGTTAATTCAGCAGCAATGA 4542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5