BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888247 Length=678 Score E Sequences producing significant alignments: (Bits) Value AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1081 0.0 > AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17876535-17882569 FORWARD LENGTH=4542 Length=4542 Score = 1081 bits (585), Expect = 0.0 Identities = 635/660 (96%), Gaps = 0/660 (0%) Strand=Plus/Plus Query 19 TTAGAGCAAGGGATGCGTCCGATTTCACGATGCTACAATCCAACCGTGTATTCGACAACA 78 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 3883 TTAGAGCAAGGGATGCGTCCGATTTCACGATGTTACAATCCAACCGCGTATTCGACAACA 3942 Query 79 ATGGGAGGAAACTTCCTCGCAGGTGCAGCCACAAGCAGCAAGCTATTCTCCAGAGGTTTC 138 |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3943 ATGGGAAGAAGTTTCTTCGCAGGTGCAGCCACAAGCAGCAAGCTATTCTCCAGAGGTTTC 4002 Query 139 TCAGTCACAAAGCCAAAATCGAAAAGCGAATCTAAAGAAGTCGCTGCAAAGAAACATAGT 198 |||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| Sbjct 4003 TCAGTCACAAAGCCAAAATCTAAAACCGAATCTAAAGAAGTTGCTGCAAAGAAACATAGT 4062 Query 199 GACGCAGAGAGAAGGAGACGGCTTCGGATTAATTCCCAGTTTGCAACTCTCCGCACCATT 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4063 GACGCAGAGAGAAGGAGACGGCTTCGGATTAATTCCCAGTTTGCAACTCTCCGCACCATT 4122 Query 259 CTTCCAAACTTGGTCAAACAGGATAAAGCATCTGTGCTTGGAGAGACTGTCAGGTACTTC 318 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 4123 CTTCCAAACTTAGTCAAACAAGATAAAGCATCTGTGCTTGGAGAGACTGTCAGGTACTTC 4182 Query 319 AACGAATTGAAAAAGATGGTTCAGGACATACCAACCACACCATCTTTAGAAGACAGCATG 378 || |||||||||||||||||||| ||||||||||||||||||||||||||||||| | || Sbjct 4183 AATGAATTGAAAAAGATGGTTCAAGACATACCAACCACACCATCTTTAGAAGACAACTTG 4242 Query 379 AGATTGGGCCACTGTAATAACAACAGAGACTTGGCAAGAGTTGTGTTCAGTTGTAGCGAC 438 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 4243 AGATTGGACCACTGTAATAACAACAGAGACTTGGCAAGAGTCGTGTTCAGTTGTAGCGAC 4302 Query 439 AGAGATGGGCTAATGTCGGAGGTTGCAGAGTCGATGAAAGCAGTGAAAGCAAAGGCGGTG 498 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 4303 AGAGAAGGGCTAATGTCGGAGGTTGCAGAGTCAATGAAAGCAGTGAAAGCAAAGGCGGTG 4362 Query 499 AGAGCTGAGATCATGACAGTAGGTGGAAGAACCAAGTGTGCCTTGTTTGTTCAAGGTGTA 558 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4363 AGAGCTGAGATCATGACAGTAGGTGGAAGAACCAAGTGTGCCTTGTTTGTTCAAGGTGTC 4422 Query 559 AATGGGAATGAAGGATTGGTCAAGCTCAAGAAATCGTTGAAACCTGTAGTGAATGGTAAA 618 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 4423 AATGGGAATGAAGGATTGGTGAAGCTCAAGAAATCGTTGAAACTTGTAGTGAATGGTAAA 4482 Query 619 TCATCATCAGAGGCGAAAAACAACAACATTGGAGGATCGTTGTTGACTCAGCAGCAATGA 678 |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| Sbjct 4483 TCATCATCAGAGGCGAAAAACAACAACAATGGAGGATCGTTGTTAATTCAGCAGCAATGA 4542 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32802897991 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5