BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888283
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor ... 2435 0.0
AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor ... 416 3e-115
> AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor
2 | chr4:17725337-17727730 REVERSE LENGTH=1925
Length=1925
Score = 2435 bits (1318), Expect = 0.0
Identities = 1529/1628 (94%), Gaps = 25/1628 (2%)
Strand=Plus/Plus
Query 1 ATGGATATTGGTGTTCATGTTCTTGGGTCGGTTACTAGTAATGGAAATGAGTCACTTGGT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 122 ATGGATATTGGTGTTCATGTTCTTGGGTCGGTTACTAGTAATGAAAATGAGTCACTTGGT 181
Query 61 CTAAAAGAGCTTAGAGGAACTAAACAAGATAGATCCGGATTCAACGGTGAGGATTGCTTG 120
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 182 CTAAAAGAGCTTATAGGAACTAAACAAGATAGATCCGGATTCATCGGTGAGGATTGCTTG 241
Query 121 CAACGAAGCTTGAAGCTAGCAAGAACAACAACAACTA-AAGAGGAAGAAGAAAACTTGTC 179
|||||||||||||||||||||||||| ||||| | | || |||||||||||||||||
Sbjct 242 CAACGAAGCTTGAAGCTAGCAAGAACGACAACTA-GAGCGGAAGAAGAAGAAAACTTGTC 300
Query 180 TTCTTCT-TCTGCAGCTGCTTATTGCAAAACGATGTCGTTTCAGCAAGGCATTCCTCTTA 238
||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 301 TTCTTCTGT-TGCAGCTGCTTATTGCAAAACGATGTCGTTTCACCAAGGCATTCCTCTCA 359
Query 239 TGAGATCTGCTTCTCCTCTTTCCTCTGATTCTCGCCGGCAAGAACAAATGCTTAGCTTTT 298
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 360 TGAGATCTGCTTCTCCTCTTTCCTCTGATTCTCGCCGTCAAGAACAAATGCTTAGCTTCT 419
Query 299 CAGATAAACCAGAAGCTCTTGATTTTAGTAAATATGTCGGTTTGGATAATAGCAGTAATA 358
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 CAGATAAACCAGACGCTCTTGATTTCAGTAAATATGTCGGTTTGGATAATAGCAGTAATA 479
Query 359 ACAAGAGCTCTCCCTCGCCGTTTCTTCACCAGATTCCTCCACCTTCTTACTTTAGAAGCT 418
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAAGAACTCTCTCTCGCCGTTTCTTCACCAGATTCCTCCACCTTCTTACTTTAGAAGCT 539
Query 419 CAGGAGGATATGGTTCTGGTGGAATGATGATGAACATGAGCATGCAAGGGAACTTCACTG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 CAGGAGGATATGGTTCTGGTGGAATGATGATGAACATGAGCATGCAAGGGAACTTCACAG 599
Query 479 GTGTTAAAGGACCTTTTACATTGACTCAATGGGCTGAGCTAGAGCAACAGGCGTTGATCT 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 GTGTTAAAGGACCTTTTACATTGACTCAATGGGCTGAGTTAGAGCAACAGGCGTTGATCT 659
Query 539 ATAAGTATATCACAGCCAATGTCCCTGTTCCTTCAAGTTTGCTCATCTCTATCAAGAAGT 598
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 660 ATAAGTACATCACAGCCAATGTCCCTGTTCCTTCTAGTTTGCTCATCTCTATCAAGAAGT 719
Query 599 CTTTTTACCCTTATGGATCTTTGCCTCCTAGTTCTTTCGGATGGGGAACTTTCCATCTCG 658
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 720 CTTTTTATCCTTACGGATCTTTGCCTCCTAGTTCCTTCGGATGGGGAACTTTCCATCTCG 779
Query 659 GTTTTGCAGGCGGTAACATGGATCCTGAGCCAGGGAGATGCCGTAGAACAGATGGGAAGA 718
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 780 GTTTCGCAGGCGGTAACATGGACCCTGAGCCAGGGAGATGCCGCAGAACAGATGGGAAGA 839
Query 719 AATGGCGGTGCTCAAGAGACGCTGTTCCTGATCAGAAATATTGTGAAAGACACATCAACA 778
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 840 AATGGCGGTGCTCAAGAGACGCCGTTCCTGATCAGAAATACTGTGAAAGACACATCAACA 899
Query 779 GAGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGTCCAATCTGGCCAAAACCAAACCGCCG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGTCCAATCTGGCCAAAACCAAACCGCCG 959
Query 839 CTGCTGCATCCAAAGCGGTTG-TAACACCGCAACAGCCTGT-GATCACTGGTAATACTAA 896
|||||||||||||||||||| || |||| ||||||||||| | || |||||||||||||
Sbjct 960 CTGCTGCATCCAAAGCGGTTACTA-CACCACAACAGCCTGTTG-TCGCTGGTAATACTAA 1017
Query 897 CAGGAGCAATGCGCGTGGATCAAGTAACCGCAGCCTCGCCATTGGAGGTCAATATATCAA 956
||| |||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1018 CAGAAGCAATGCCCGTGCATCAAGCAACCGCAGCCTCGCCATTGGAAGTCAATATATCAA 1077
Query 957 TCCTTCTACAGATTCTCTACCTAACAACAGAGGAGTTTCGATATATCCTTCCACCATCAG 1016
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1078 TCCTTCTACAGAATCTTTACCTAACAACAGAGGAGTTTCGATATATCCTTCCACCGTCAA 1137
Query 1017 TTTACAACCCAAGGAATCTCCGATTATTCAGCAGAAACACAGAaacaacaacaacaacaa 1076
||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 1138 CTTACAACCCAAGGAATCTCCGGTTATTCATCAGAAACACAGAAACAACAACAAC--C-- 1193
Query 1077 caacCCTTTTGAGTTTGGACACATATCCTCTGATTCGTTACTCAACCCGAATTCCGCCAA 1136
| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1194 C-----TTTTGAGTTTGGACACATATCCTCTGATTCGTTACTCAACCCGAATACCGCAAA 1248
Query 1137 GACCTATGGATCATCGTACCTTG-ATTTCAGCAGCAACCAGGACAAACATTCAGTGAATC 1195
||||||||||||||||| | ||| |||||||||||||||| || || ||||||| |||||
Sbjct 1249 GACCTATGGATCATCGTTC-TTGGATTTCAGCAGCAACCAAGAGAAGCATTCAGGGAATC 1307
Query 1196 ACAATCACAGTTCTTGGCCTGAAGAGCTAAAATCAGATTGGACACAGCTTTCAATGTCAA 1255
||||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 1308 ACAATCACAATTCTTGGCCTGAAGAGCTGACATCAGATTGGACACAGCTCTCAATGTCAA 1367
Query 1256 TTCCAATAGCATCATCATCTCCGTCCTCcacacacaacaacaacaacactggtcaagaca 1315
||||||||||||||||||| || ||||||||||||||||||||||| || |||||| |
Sbjct 1368 TTCCAATAGCATCATCATCCCCTTCCTCCACACACAACAACAACAA---TGCTCAAGAAA 1424
Query 1316 caaccacacTCTCACCTCTCAGGCTATCCCGCGAGCTTGACCTATCGATCCAAACCGAGG 1375
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1425 AAACAACACTCTCGCCTCTCAGGCTATCCCGCGAGCTTGACCTATCGATCCAAACCGATG 1484
Query 1376 AAACAACACTTGAACCTGCTGTCAAAAAGGTGAATACTTGGATACCAATCTCATGGGGAA 1435
|||||||| | || ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1485 AAACAACAATCGAGCCTACTGTGAAAAAGGTGAATACTTGGATACCAATCTCATGGGGAA 1544
Query 1436 ACTCCTTAGGAGGTCCTTTAGGTGAAGTACTAAACAGCACAACGAATAGTCCAACATTGG 1495
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1545 ACTCCTTAGGAGGTCCTCTAGGTGAAGTACTAAACAGTACAACGAATAGTCCAACATTTG 1604
Query 1496 GATCTTCTCCTACAGGGGTTTTGCAAAAGTCAACCTTTTGTTCACTCTCTAACAACAGCT 1555
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1605 GATCTTCTCCTACAGGGGTTTTGCAAAAGTCCACATTTTGTTCACTCTCTAACAACAGCT 1664
Query 1556 CCGTGAGCAGCCCCATTGCAGAGAACAACAACAGAAACAATGGCGATTACTTTCATTACA 1615
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1665 CCGTGAGCAGCCCCATTGCAGAGAACAACA---GACACAATGGCGATTACTTTCATTACA 1721
Query 1616 CAACCTGA 1623
||||||||
Sbjct 1722 CAACCTGA 1729
> AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor
1 | chr2:9728756-9731301 FORWARD LENGTH=1838
Length=1838
Score = 416 bits (225), Expect = 3e-115
Identities = 380/452 (84%), Gaps = 21/452 (5%)
Strand=Plus/Plus
Query 406 TACTTTAGAAGCTCAGGAGGATATGGTTCT-GGTGGAATGATGATGA-ACATG-AGCATG 462
|||| ||||| ||| ||||||||||| | || |||||||||| | ||| | | ||||
Sbjct 398 TACTGTAGAAACTC---AGGATATGGTT-TAGGAGGAATGATGA--ACACAAGCAACATG 451
Query 463 CAAGGGAAC---TTCACTGGTGTTAAAGGACCTTTTACATTGACTCAATGGGCTGAGCTA 519
|| || ||| || || || || |||||||||||| |||||||||| ||||| ||||||
Sbjct 452 CATGGAAACTTGTTGACAGGAGTAAAAGGACCTTTTTCATTGACTCAGTGGGCAGAGCTA 511
Query 520 GAGCAACAGGCGTTGATCTATAAGTATATCACAGCCAATGTCCCTGTTCCTTCAAGTTTG 579
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 512 GAGCAACAGGCGTTGATCTATAAGTATATCACAGCCAATGTCCCTGTTCCATCTAGTTTA 571
Query 580 CT-CATCTCTATCAAGAAGTCTTTTTACCCTTATGGATCTTTGCCTCCTAGTTCTTTCGG 638
|| | ||||| ||||||| ||||||| ||||||||| || |||||||||| |||||| ||
Sbjct 572 CTTC-TCTCTCTCAAGAAATCTTTTTTCCCTTATGGTTCCTTGCCTCCTAATTCTTTTGG 630
Query 639 ATGGGGAACTTTCCATCTCGG-TTTTGCAGGCGGTAACATGGATCCTGAGCCAGGGAGAT 697
|||||| |||| ||||| || |||| | || |||||||||||||| |||||||||||||
Sbjct 631 ATGGGGCTCTTTTCATCTGGGCTTTTCC-GGTGGTAACATGGATCCCGAGCCAGGGAGAT 689
Query 698 GCCGTAGAACAGATGGGAAGAAATGGCGGTGCTCAAGAGACGCTGTTCCTGATCAGAAA- 756
| || | |||||||| ||||||||||||||||| || ||||||||||| ||||| |||
Sbjct 690 GTCGCCGGACAGATGGAAAGAAATGGCGGTGCTCGAGGGACGCTGTTCCCGATCA-AAAG 748
Query 757 TATTGTGAAAGACACATCAACAGAGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGTCCAA 816
|| |||||| |||| || ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 749 TACTGTGAACGACATATTAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAA 808
Query 817 TCTGGCCA-AA-ACCAAACC-GCCGCTGCTGC 845
|||||| || || || | ||||| |||||
Sbjct 809 AATGGCCACAATACTAATGCTGCCGCCGCTGC 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5