BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888284
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37730.1 | Symbols: AtbZIP7, bZIP7 | basic leucine-zipper 7 ... 1349 0.0
> AT4G37730.1 | Symbols: AtbZIP7, bZIP7 | basic leucine-zipper
7 | chr4:17723666-17724915 FORWARD LENGTH=1250
Length=1250
Score = 1349 bits (730), Expect = 0.0
Identities = 847/904 (94%), Gaps = 5/904 (1%)
Strand=Plus/Plus
Query 5 GCTGTTTATACAGTATAATTTACGGTCGTACATCGTATTTTACAAATATGACCAAACTAC 64
||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||| |||
Sbjct 146 GCTGTTTATACAGTATAGTCTACGGTCTTACATCGTATTTTGGAAATATGACCAAATTAC 205
Query 65 CCCTCTGGTTTG-CCAATAAATATCAAGCTCCAACAATGCAATTCTTCCCTTTTCCCCTT 123
|||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CCCT-TGGTTTGTCC-ATAAATATCAAGCTCCAACAATGCAATTCTTCCCTTTTCCCCTT 263
Query 124 CTAATTTCTCTCATCTCTCTATTAGAAAAAATATTAGCAATTATGTTGTCCACTGTACCG 183
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 264 CTAATTTCTCTCATCTCTCTATTAGAAAAATTATTAGCAATTATGTTGTCCACTGCACCG 323
Query 184 GCATTCTCATTCTCCGAACCGGGTTTGGTTAATCAATTCTCGGGTTTCCAAACCGGGTTC 243
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 GCCTTTTCATTCTCCGAACCGGGTTTGGTTAATCAATTCTCGGGTTTCCAAACCGGGTTC 383
Query 244 ACTCCTTGGGAATGGGACTGCTCTGATCTCTTTTCCGTGGACCAAATGTTTCTTGAACCG 303
||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 384 ACTCCTTGGGAATGGGATTGCTCTGATCTCTTTTTCGTGGACCAAATGTCTCTTGAACCG 443
Query 304 GCCGTCCCGAGTCCTTGTGATGGTGAATCCGACACTGGTTCTGTCAAAATTAATTCCGGT 363
||| |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 444 GCCATCCCTAGTCCTTGTTATGGTGAATCCGACACTGGTTCCGTCAAAATTAATTCCGGT 503
Query 364 TCTCATGACATGAAAACCGGTTCTGACGTTTCTTGTGCCGGTTTCGTCAAAACTAATTC- 422
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
Sbjct 504 TCTCATGACATGAAAACCGGTTCTGACGAATCTTGTGCCGGTTTCGTCAAAATTAATCCT 563
Query 423 CGGTTTTGATGACGCCGACAGATCAAACGGTCTACCGTGCTCTCAAGCAGACGAACCGGA 482
|| || ||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 564 CG-TTGTGACGACGCCGACATATCAAACGATCTACCGTGCTCTCAAGCAGATGAACCGGA 622
Query 483 CTCGGAAGACTCAAAACAATTGACAGCCATCTCAAATTTCGGTTCGGGAGAGCATAACCG 542
|||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 623 CTCGGACGACACAAAACAATTGACAGCCATCACAAATTTCGGTTCGGGAGAGAATAACCA 682
Query 543 TAACCGGAAAAAATTGATCCAATCGGAGATGACCGACGAGCGGAAGAGGAAGAGGATGGA 602
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 683 TAACCGGAAAAAAATGATCCAACCGGAGATGACCGACGAGCGGAAGAGGAAGAGGATGGA 742
Query 603 ATCAAACCGGGAATCAGCGAAACGGTCGAGAATGCGTAAACAAAGTCACATAGATAACTT 662
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 743 GTCAAACCGGGAATCAGCGAAACGGTCAAGAATGCGTAAACAAAGTCACATTGATAACTT 802
Query 663 ACGGGATCAAGTAAACCGGCTGGATTTAGAAAACCGCGAGCTCGGGAACCGGCTCCAGTT 722
||| || |||||||||||| |||||||||||||||| |||||||||||||| |||| |||
Sbjct 803 ACGAGAGCAAGTAAACCGGTTGGATTTAGAAAACCGTGAGCTCGGGAACCGACTCCGGTT 862
Query 723 AGTTTTGTACCAGCTTCAACGAGTGAATTCCGACAATAACAGGCTCGTGACAGAACAAGA 782
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 863 AGTTTTACACCAGCTTCAACGAGTGAATTCCGACAATAACCGGCTCGTGACAGAACAAGA 922
Query 783 GATTCTTCGGCTAAGATTGTCGGAGATGCGTCGGATTCTGATCATAAGACAGCTTCAACA 842
||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 923 GATACTCCGGCTAAGATTGTCGGAGATGCGTCGGATTCTGATCATTAGACAACTTCAACA 982
Query 843 ACAGCAACAATGGGAATTACATAACCGGAGAATGATCATGACCGAACAAAACCACCCCCA 902
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 983 ACAGCAACAATGGGAACTACATAACCGGAGAATGATCATGACTGAACAAAACCACCCTCA 1042
Query 903 TCTT 906
||||
Sbjct 1043 TCTT 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5