BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888289
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44270.2 | Symbols: ROL5 | repressor of lrx1 | chr2:18297861... 350 1e-95
AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein... 67.6 1e-10
> AT2G44270.2 | Symbols: ROL5 | repressor of lrx1 | chr2:18297861-18300273
REVERSE LENGTH=1414
Length=1414
Score = 350 bits (189), Expect = 1e-95
Identities = 275/312 (88%), Gaps = 23/312 (7%)
Strand=Plus/Plus
Query 245 TCCAGTATGGTTTGCCTCGTCAGATTGTTTCATACAAAGATATGTATGGATGGACAATGG 304
|||| ||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||
Sbjct 500 TCCAATATGGTTTGCCTCTTAAGATTGTTTCATATAAAGATCTGTATGGATGGACAATGG 559
Query 305 ACGACATTGTGAAAATGATCGGTTCGAAGAACAATTGCACCTTTTTGTGGTGTATTCCGT 364
| || |||||||||||||| |||| |||||||||||||||| ||||||||||||||||||
Sbjct 560 ATGAGATTGTGAAAATGATTGGTTTGAAGAACAATTGCACC-TTTTGTGGTGTATTCCGT 618
Query 365 ---------C-T-A-C----A---GCGTTATTGAAAGTAGATAAGCTAGTCGCTGGACAT 405
| | | | | ||||||||||||||||| ||||||||| ||||||||
Sbjct 619 CGACAGGCACTTGACCGAGGAGCTGCGTTATTGAAAGTAGAGAAGCTAGTCACTGGACAT 678
Query 406 AATGCAGATGATATAGCAGAAACCGTTCTCTTGAACATATTGCGAGGGGATATTGCT--- 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 AATGCAGATGATATAGCAGAAACCGTTCTCTTGAACATATTGCGAGGGGATATTGCTAGA 738
Query 463 TTAAGTCGGTGCACATCGATTACTACTGGTGAAGATGGTCCCATTCCAAGATGTAAACCT 522
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TTAAGTAGGTGCACATCGATTACTACTGGTGAAGATGGTCCCATTCCAAGATGTAAACCT 798
Query 523 TTCAAGTATACG 534
||||| | ||||
Sbjct 799 TTCAACTTTACG 810
> AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein,
blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420
68 kDa protein {Cicer arietinum}
| chr2:19200860-19203138 FORWARD LENGTH=2279
Length=2279
Score = 67.6 bits (36), Expect = 1e-10
Identities = 45/49 (92%), Gaps = 2/49 (4%)
Strand=Plus/Plus
Query 498 TGGTCCCATTCCAAGATGTAAACCTTTCAAGTATACG-ACGAAAAAGGA 545
||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 1166 TGGTCCCATTCCAAGATGTAAACCTTTCAAGCATACATACGAAAA-GGA 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26171990587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5