BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888307
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37480.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1886 0.0
> AT4G37480.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr4:17619261-17621596 FORWARD LENGTH=1596
Length=1596
Score = 1886 bits (1021), Expect = 0.0
Identities = 1312/1447 (91%), Gaps = 42/1447 (3%)
Strand=Plus/Plus
Query 1 ATGACGATTCTCGCCGGATTGATACGACGGCGTTTTAGTAGATTGGTTACGGTT--AC-G 57
||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||| || |
Sbjct 1 ATGACGATTCTCGCCGGGTTGATACGCCGGCGTTTTAGTAGATTAGTTCCGGTTCAACTG 60
Query 58 -ATT-CCGTTTC-AATTGAATTACGGA-T-TC-GT-A-CGGAG-CCA--AAGTACTCGGT 106
||| | ||||| || | | || | | || | | | ||| | | ||| |||||||
Sbjct 61 AATTACGGTTTCGAACCG--TCGCGAATTCTCTTTAACCCGAGTCAAGGAAGAACTCGGT 118
Query 107 TGCTGAGCGGCGAGGCTGAGTCGAATCGGAACGAGTTTCCGGTGGAGAACGCGTACGTTA 166
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 119 TGCTGAGCGGCGAGGCTGAGTCCAATCGGAACGAGTTTCCGGTGGAGAACGCTTACGATA 178
Query 167 TCTTGAATGTCTCCGAAACCAGCTCAATCGCAGAGATCAAAGCATCATTTCGTAGACTCG 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TCTTGAATGTCTCCGAAACCAGCTCAATCGCAGAGATCAAAGCATCATTTCGCAGACTCG 238
Query 227 CGAAAGAGACTCATCCTGATCTGATCGAATCTAAGAAAGATCCATCTAATTCCATACGCT 286
| || |||||||||||||||||||||||||| |||||||||||||| ||||| | ||| |
Sbjct 239 CCAAGGAGACTCATCCTGATCTGATCGAATCCAAGAAAGATCCATCAAATTCGAGACGAT 298
Query 287 TTGTTCAGATTCTCGCTGCTTATGAGATTCTTTCAGATTCTGAAAAGAGAGCACACTATG 346
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 TCGTTCAGATTCTCGCTGCTTATGAGATTCTATCAGATTCTGAAAAGAGAGCACACTATG 358
Query 347 ATAGATATTTGCTATCTCGGAGAATGGTAATGACGAAACAAT-GTAGACAAGGGTATATG 405
||||||||||||||||||||||||||||||||| ||| || | | ||||||| ||||||
Sbjct 359 ATAGATATTTGCTATCTCGGAGAATGGTAATGAAGAAGCACTCG-GGACAAGGTTATATG 417
Query 406 ATTCACAGGTATAAAGCACGATTGACATTGAGTCAAGAGATGGAAGTAGTTGAATGGTTA 465
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATTCACAGGTATAAAACAGGATTGACATTGAGTCAAGAGATGGAAGTAGTTGAATGGTTA 477
Query 466 AAGTGGTATAGAGAAGCAATACATGATATAGTATTGGAGAAGAGAGTGGCAAATGGTACA 525
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 478 AAGTGGTATAGAGAAGCAATACATGATATAGTATTGGAGAAGAGAGTAGCAAATGGTACT 537
Query 526 GGTTACTTAGATGAA-TTGGAAGAAGATTTTTATTCGGCTATACGAGCCGCGTACTTTGG 584
||||||||||||||| ||| |||||||||||||||| ||||||||||| || ||||||||
Sbjct 538 GGTTACTTAGATGAACTTG-AAGAAGATTTTTATTCAGCTATACGAGCGGCCTACTTTGG 596
Query 585 GCCTGATGTTGAATCTGTGGAGCTTCTTCCTGATTGTTTTGAAGCTGAGGAAAGGTCTGT 644
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCCTGATGTTGAATCTGTTGAGCTTCTTCCTGATTGTTTTGAAGCTGAGGAAAGGTCTGT 656
Query 645 GTATGATACACGAGAGGTTTTGCATTTGGTTTCAGGACGAGATCTTTTTGGTATGGTTTG 704
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 657 GTATGATACACGAGAGGTTTTGCATTTGGTATCAGGACGGGATCTTTTTGGTATGGTTTC 716
Query 705 CTTGGTTGATAACTTCCTTGAGCTTTCTTCTGCTTGCTCCAAGAAATTGGCTTTGTCGTC 764
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 717 CTTGGTTGATAACTTCCTTGAGCTTTCTTCTGCTTGCTCAAAGAAATTGGCTTTGTCGTC 776
Query 765 ATTTATGGATTCGGACCT-GAGTCAAGCAGTTGAGAAAGGCAAGTATGACATGATGTCTG 823
||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 777 GTTTATGGATTCGGACCTTG-GTCAAGCAGTTGAGAAAGGCAACAATGACATGATGTCTG 835
Query 824 ATGAAAGGATTGGACTTCAGATATCTCATATACAATCTTCTAGAAGTAAAAACCATGTTT 883
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 836 CTGAAAGGATTGGTCTTCAGATATCTCATATACAATCTTCAAGAAGTAAAAACCATGTTT 895
Query 884 CGGATGCATATAAAGATATTCAGCTGCATGTTTCTGGAAGAGTTGTTGCTACAGCTATTA 943
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 896 CTGATGCGTATAAAGATATTCAGCTGCATGTATCTGGAAGAGTTGTTGCTACAGCCATTA 955
Query 944 GGATTCCCCCAAAAGGGTATTTTGAAAAGAAACAAATTGAGGGTGATCACGATCTCATAC 1003
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 956 GGGTTCCCCCAAAAGGGTATCATGAAAAGAAACAAATTGAGGGTGATCACGATCTTATAC 1015
Query 1004 ACGTTTTCCTCAATTCAGATGAAAGATCTAAGCATGAAACTGAAACGT-TACCTGGAAAT 1062
||||||||||||||||||||||| ||||||| |||| |||||| || | || ||||||
Sbjct 1016 ACGTTTTCCTCAATTCAGATGAAGGATCTAATCATGGCACTGAATCGCCT-CCGGGAAAT 1074
Query 1063 GAAAGTGGAGCCAGACTTCTTGTTGGAACTATAAGTGGTCTTGGAACAAGTCC-AGATGA 1121
|||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 1075 GAAAGTGGTGCCAGACTTCTTGTTGGAACTATAAGTGGTCTTGGGACAA-TCCCAGATGA 1133
Query 1122 AGGTTCATGTAATGTCTATGATGGGAATGGTGCTAAAACTCACGTGATAATGAAACATAG 1181
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1134 AGGTTCATGTTATGTCTATGATGGGAATGGTGCTAAGACTCATGTGATAATGAAACATAG 1193
Query 1182 GACATTTCTGGTTTGTGAC-TC-GTA-TGAT-CTTGCATTTCTTTTCATGTA-CC-TTCT 1235
|||||||||||| | ||| | | | || | | ||| | || || || |
Sbjct 1194 GACATTTCTGGT--GAGACATTTGCACTGGTACAAA-ATTGGGGAAAAGGTTTCCATT-T 1249
Query 1236 GCAAAT-TACAACATATGCAGTAGAGCGAAATTACCACCAAGCAAGTTTTGGTTGTTTGA 1294
| ||| || | | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1250 GTGAATGTAGA---T--GCAGTAGAGCGAAGTTACCACCAAGCAAGTTTTGGTTGTTTGA 1304
Query 1295 GCCTCGTTGTGGTTTGCATGATGTCGGAGGATGGTATGTTGAAACTTATGGGAAGGATAA 1354
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1305 GCCTCGTTGTGGTTTGCATGATGTCGGAGGATGGTATGTTGAAACTTATGGGAAAGATAA 1364
Query 1355 AAAGAGCAGGACGGTCCTGGCTCAAAGATTCTGGGATGGACTGGAAGAGGGGAGTACACT 1414
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1365 AAAGAGCAGGACGGTCCTGGCACAAAGATTCTGGGATGGCCTGGAAGAGGGGAGTACACT 1424
Query 1415 GGATGGG 1421
|||||||
Sbjct 1425 GGATGGG 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5