BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888319
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39460.1 | Symbols: SAMC1, SAMT1 | S-adenosylmethionine carr... 457 3e-128
> AT4G39460.1 | Symbols: SAMC1, SAMT1 | S-adenosylmethionine carrier
1 | chr4:18355993-18358893 REVERSE LENGTH=1188
Length=1188
Score = 457 bits (247), Expect = 3e-128
Identities = 255/259 (98%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 12 TGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCA 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCA 880
Query 72 GGGATCAGCCAAACAATATCAAAGAATCGTTGACTGTGTTCAAACAATTGTAAGGGAGGA 131
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 881 GGGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGA 940
Query 132 AGGAGTTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGG 191
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 AGGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGG 1000
Query 192 TTCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAA 251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 ATCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAA 1060
Query 252 TACGGTTAAAGAAACCAAA 270
|||||||||||||||||||
Sbjct 1061 TACGGTTAAAGAAACCAAA 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12365866254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5