BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888382

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G36820.1 | Symbols:  | Protein of unknown function (DUF607) ...   274    5e-73
  AT4G39790.1 | Symbols:  | Protein of unknown function (DUF630 a...   185    2e-46


> AT4G36820.1 | Symbols:  | Protein of unknown function (DUF607) 
| chr4:17346805-17347994 FORWARD LENGTH=1101
Length=1101

 Score =  274 bits (148),  Expect = 5e-73
 Identities = 219/250 (88%), Gaps = 18/250 (7%)
 Strand=Plus/Plus

Query  3    GGCGTCGCAAAGTCTGATGAACTGTCGTACTTCG---TCTTCTTCGTTAGCCCTGCGAAC  59
            ||||||||||||||| ||||||||||||||||||   ||||||||||||||| |||||||
Sbjct  138  GGCGTCGCAAAGTCTCATGAACTGTCGTACTTCGTCTTCTTCTTCGTTAGCCATGCGAAC  197

Query  60   TAGGGTTCCTAAAGATATAGGAGAAGCCACGATTGATCCAGAGCCTGGGGATTTGACGAC  119
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct  198  TAGGGTTCCTAAAGATATAGGAGAAGCCACGATTGATCCAGAGCCTGGAGATTTGACGAT  257

Query  120  TTCTCGGAGGTTTTTGCATAAAATCTCCATGAATGGGATTGATATGACTTCGAAGA-GT-  177
            ||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||| || 
Sbjct  258  TTCTCAGAGGTTTTTGAATAAATTCTCCATGAATGGGATTGATACGACTTCGAAGATGTC  317

Query  178  T-T-G---AT-G-C--A-G-A-A-GCTTCGAGAAATGGATGTGAACAAGGATAGGATTCG  224
            | | |   |  | |  | | | | ||||  |||||||||| ||||||||||| |||||||
Sbjct  318  TATTGGGGAGAGTCTGATGGAGAAGCTTAAAGAAATGGATATGAACAAGGATCGGATTCG  377

Query  225  ATTAGACGGA  234
            ||||||||||
Sbjct  378  ATTAGACGGA  387


> AT4G39790.1 | Symbols:  | Protein of unknown function (DUF630 
and DUF632) | chr4:18462190-18464824 REVERSE LENGTH=2340
Length=2340

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 121/131 (92%), Gaps = 2/131 (2%)
 Strand=Plus/Plus

Query  243   TAAAACAAGATCAGCTTCTAAAGATCTTCATTCAAGAATCAGAGTCGCGATTCAATCTGT  302
             |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1506  TAAAACAAGAGCAGCTGCTAAAGATCTTCATTCAAGAATCAGAGTCGCGATTCAATCTGT  1565

Query  303   TGATTCGATTTCAAAGCTGG-TTGAGAGATTCAGAGATGATGAGCTCGAGCCACAGCTAT  361
             ||| ||||||||||||| || |||||||| ||||||| ||||||||| | |||||||| |
Sbjct  1566  TGAATCGATTTCAAAGC-GGATTGAGAGAATCAGAGACGATGAGCTCCACCCACAGCTCT  1624

Query  362   TAGAGTTTCTT  372
             |||||||||||
Sbjct  1625  TAGAGTTTCTT  1635



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5