BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888385
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36790.1 | Symbols: | Major facilitator superfamily protein... 2289 0.0
> AT4G36790.1 | Symbols: | Major facilitator superfamily protein
| chr4:17336172-17338371 FORWARD LENGTH=1725
Length=1725
Score = 2289 bits (1239), Expect = 0.0
Identities = 1393/1470 (95%), Gaps = 0/1470 (0%)
Strand=Plus/Plus
Query 1 ATGGGCCGTGCTCGACCTCGTTCCGGTTTCATCTCCGTCGCTTTTAAATTCTTCCGGTCT 60
||||| | ||||||| ||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 189 ATGGGTCATGCTCGAACTCGTACCGGTATCATCTCCGTCGCTTTTAAATTCTTCAGGTCT 248
Query 61 CTGTTCCCTCGCAATCACCGTACTAATAGCATGAAGATAAAAACAGGAACGTTTTTGGGT 120
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 249 CTGTTCCCTCGCCATCACCGTACTAACAGCATGAAGATAAAAACAGGAACGTTTTTGGGG 308
Query 121 GTTTCGATATCATTGATTCTTATAAACTTAGCTGCGATCATGGAACGAGCAGACGAGAAT 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 309 GTTTCGATATCATTGATTCTTATAAACTTAGCTGCGATCATGGAACGTGCAGACGAGAAT 368
Query 181 CTATTACCGTCGGTTTATAAAGAAGTGAGTGAAGCATTTAACGCAGGACCATCAGATTTA 240
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CTATTGCCTTCGGTTTATAAAGAAGTGAGTGAAGCATTTAACGCAGGACCATCAGATTTA 428
Query 241 GGCTACTTAACATTCGTTAGAAACTTTGTTCAAGGACTTGCTTCTCCATTAGCAGGAGTT 300
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 429 GGCTACTTAACATTCGTTAGAAACTTTGTTCAAGGACTTGCATCACCATTAGCAGGAGTT 488
Query 301 CTTGTCATTACTTATGATCGTCCCATTGTTCTTGCAATTGGTACTTTCTGTTGGGCTTTA 360
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 489 CTTGTCATTACCTATGATCGTCCCATTGTTCTTGCAATAGGTACTTTCTGTTGGGCTTTA 548
Query 361 TCTACTGCTGCAGTTGGAGCCAGCAGTTACTTCATTCAGGTTGCTTTATGGAGAGCAGTG 420
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 549 TCAACTGCTGCAGTTGGAGCCAGCAGCTACTTCATTCAGGTTGCTTTATGGAGAGCAGTG 608
Query 421 AATGGGTTTGGATTGGCAATTGTTATACCGGCGCTTCAGTCGTTTATCGCAGATAGTTAC 480
||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 609 AATGGTTTTGGATTGGCAATTGTTATACCCGCGCTTCAATCGTTTATTGCAGATAGTTAT 668
Query 481 AGGGATGGTGCCAGAGGAGCTGGTTTTGGTTTGTTGAACCTCATTGGTACGATTGGTGGT 540
| ||||||||| |||||||||||||| || ||||||||||||||||||| || ||||||
Sbjct 669 AAGGATGGTGCGAGAGGAGCTGGTTTCGGAATGTTGAACCTCATTGGTACAATCGGTGGT 728
Query 541 ATAGGAGGAGGTGTTGTAGCGACGGTTATGGCTGGTTCAGAGTTTTGGGGCATACCGGGC 600
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 729 ATAGGAGGAGGTGTTGTAGCAACTGTTATGGCTGGTTCAGAGTTTTGGGGCATACCGGGA 788
Query 601 TGGCGCTGTGCTTTCATAATGATGGCAACGCTCAGTGCAGTGATCGGATTACTCGTCTTT 660
||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 789 TGGCGTTGTGCTTTTATAATGATGGCAGCGCTCAGCGCAGTGATCGGATTACTTGTCTTT 848
Query 661 CTCTTCGTTGTTGACCCGAGAAAGAACATTGAACGAGATGAACTTATGGTTCATAAGATG 720
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 849 CTCTTCGTTGTTGACCCGAGAAAGAACATTGAACGAGAGGAACTAATGGCTCATAAGATG 908
Query 721 AATTCGACCTCGGTTTGGAATGATTCATTGGCAGCTGCAAAATCTGTCGTCAAAGTAAGT 780
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 909 AATTCGAACTCGGTTTGGAATGATTCATTAGCAGCTGCAAAATCTGTCGTCAAAGTAAGT 968
Query 781 ACCTTTCAGATAATCGTCGCACAAGGAATCATTGGTTCGTTTCCATGGACCGCAATGGTT 840
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 969 ACCTTTCAGATAATCGTCGCGCAAGGAATCATTGGTTCGTTTCCGTGGACCGCGATGGTT 1028
Query 841 TTCTTTACGATGTGGTTTGAGCTTATTGGTTTCGATCATAACCAGACTGCAGCTTTGCTT 900
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1029 TTCTTTACAATGTGGTTTGAGCTTATTGGCTTCGATCATAACCAGACTGCAGCTTTGCTT 1088
Query 901 GGTGTATTTGCTACGGGAGGTGCGATAGGAACATTAATGGGAGGGATAATCGCAGATAAA 960
|| ||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1089 GGGGTATTTGCTACAGGAGGAGCGATAGGAACATTAATGGGAGGGATAATAGCGGATAAA 1148
Query 961 ATGTCACGGATATATCCAAATTCCGGAAGAGTGATGTGTGCGCAATTCAGTGCATTCATG 1020
||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1149 ATGTCGCGGATATATCCGAATTCGGGTAGAGTGATGTGTGCGCAGTTCAGTGCATTCATG 1208
Query 1021 GGAATCCCATTCTCAATCATTCTTCTGAAAGTAATCCCACAAAGCACAAGCAGCTACTCA 1080
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GGAATCCCATTCTCTATTATTCTTCTGAAAGTAATCCCACAAAGCACAAGCAGCTACTCA 1268
Query 1081 ATCTTCTCAATAACTCTCTTCTTGATGGGTCTTACCATAACTTGGTGCGGATCAGCGGTT 1140
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1269 ATCTTCTCGATAACTCTCTTCCTGATGGGTCTTACCATAACTTGGTGCGGATCAGCGGTC 1328
Query 1141 AATGCACCGATGTTTGCCGAAGTCGTTCCTCCTAGACACCGTACGATGATCTACGCGTTT 1200
|||||||| |||||||| |||||||||||||| || |||||||| |||||||||||||||
Sbjct 1329 AATGCACCAATGTTTGCAGAAGTCGTTCCTCCAAGGCACCGTACAATGATCTACGCGTTT 1388
Query 1201 GACCGTGCTTTTGAAGGGTCATTCTCGTCTTTTGCTGCGCCTTTGGTTGGAATTTTGTCT 1260
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1389 GACCGTGCTTTCGAAGGGTCATTCTCATCTTTTGCTGCGCCTTTGGTTGGAATTTTGTCA 1448
Query 1261 GAGAAAATGTTTGGGTATGACTCGAGAGGTATTGATCCTTTGAAAGGTTCCTCTGTCCGT 1320
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1449 GAGAAACTGTTTGGGTATGACTCAAGAGGTATTGATCCTTTGAAAGGTTCCTCTGTTCGT 1508
Query 1321 GAGGCTGATGCCCTTTCAAAGGGGCTTCTGTCGATGATGGCTGTTCCGTTTGGGCTCTGT 1380
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1509 GAGGCTGATGCCCTTTCAAAGGGGCTTCTGTCAATGATGGCTGTTCCGTTTGGGCTCTGT 1568
Query 1381 TGTCTCTGTTACACTCCTTTGCATTTTGTTTTCCAGAAAGATCGAGAAAACGCGAAAATC 1440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 TGTCTCTGTTACACTCCGTTGCATTTTGTTTTCCAGAAAGATCGAGAAAACGCGAAAATC 1628
Query 1441 GCGAGCTCTAAAGAAACTGAAATGATTTGA 1470
|||||||||||||||||||||||||| |||
Sbjct 1629 GCGAGCTCTAAAGAAACTGAAATGATCTGA 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72489586980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5