BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888403
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36610.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1591 0.0
> AT4G36610.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:17265390-17267314 REVERSE LENGTH=1149
Length=1149
Score = 1591 bits (861), Expect = 0.0
Identities = 912/937 (97%), Gaps = 2/937 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAACTTTGTTGAGGTACAAAAACCATTGTTATACGGTCTGATGAAAATGGCCGGC 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 41 ATGGTGAACTTTGTTGAGGTACAAAAACCATTGTTGTACGGTCTGATGAAAATGGCTGGC 100
Query 61 GTCGTTCCTTACACTTTAGAGATTGAACCAGGGACGAAGATAAACTTTTGGGTCCCTAAG 120
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 101 GTCGTTCCTTACACTTTAGAGATCGAACCAGGGACGAAGATCAACTTTTGGGTCCCTAAG 160
Query 121 GAAACCCTAAAGAAGAGA-TCCTGTACCGGAAAACCAACTAAACCCGATAAACCTAAAAA 179
|||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 161 GAAACCCTAAAGAAGA-ATTCCGGTACCGGAAAACCAACGAAACCCGATAAACCTAAAAA 219
Query 180 GCCTGCCGTCTTGTTAATCCATGGTTTCGCCGGCGAAGGAATCGTGACGTGGCAGTTCCA 239
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 220 GCCTGTCGTCTTGTTAATCCATGGTTTCGCTGGCGAAGGAATCGTGACGTGGCAGTTCCA 279
Query 240 AGTCGGTGCATTATCCAAGAAATACTCGGTCTACATACCGGACCTCCTCTTTTTCGGTGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 AGTCGGTGCATTATCCAAGAAATACTCGGTCTACATACCGGACCTCCTCTTTTTCGGTGG 339
Query 300 ATCCTACTCCGACAACTCGGACCGGTCTCCGGCGTTTCAAGCCGACTGTTTGGTCAAGGG 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 ATCCTACACCGACAACTCGGACCGGTCTCCGGCGTTTCAAGCCGACTGTTTGGTCAAGGG 399
Query 360 GCTTCGTATCCTCGGCGTGGATAAGTTTGTTCCCGTAGGGTTTAGCTACGGGGGCATGGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GCTTCGTATCCTCGGCGTGGATAAGTTTGTTCCCGTAGGGTTTAGCTACGGGGGCATGGT 459
Query 420 GGCTTTCAAGATCGCTGAGGCTTGCCCGGACATGGTTAGAGCAATCGTTGTGTCTGGTTC 479
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 460 GGCTTTCAAGATCGCTGAAGCTTACCCGGACATGGTTAGAGCAATCGTTGTGTCTGGTTC 519
Query 480 GATTCCCACGATGACCGATACCATTAATGAGGCGAGCTTGAACCGGTTAGGGTTTACTTC 539
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 520 GATTCCCACAATGACCGATACCATTAATGAGGCGAGCTTGAACCGGTTAGGGTTTAGTTC 579
Query 540 TTCCACGGATCTCTTGTTACCGACTTCGGTTAAGGGACTTAAGGCTCTCTTCACCATTGC 599
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 580 TTCCACGGATCTCTTGTTACCGACTTCTGTTACGGGACTTAAGGCTCTCTTCACCATTGC 639
Query 600 TGTGCATAAACCCATGTGGTTCCCTAAACGATTGTTCAAAGACTACATCGAGGTAATGTT 659
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGTGCATAAACCCTTGTGGTTCCCTAAACGATTGTTCAAAGACTACATCGAGGTAATGTT 699
Query 660 TAACAACAGGAAAGAAAGAGCTGAACTGTTAGAGGCTGTTGTAGTCAGCAACAAGGAAGC 719
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 700 TAACAACAGAAAAGAAAGAGCTGAACTGTTAGAGGCTGTTGTGGTCAGCAACAAGGAAGC 759
Query 720 GCAAATCCCTCATTTCCCACGGAAAATACATTTCTTATGGGGTGAAAGTGATCAAATCTT 779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 760 GCAAATCCCTCATTTCCCACGGAAAATACATTTCTTGTGGGGTGAAAGTGATCAAATCTT 819
Query 780 TGATCTCGAATTGGCTAGAGACATGAAAGAACAACTAGGTGAGAATGCAACAATAGAGAG 839
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 820 TGATCTCGAATTGGCTAGAGACATGAAAGAACAAATAGGTGAGAACGCAACAATAGAGAG 879
Query 840 TATAAAGAAGGCAGGCCATTTGGTACAATTGGAAAGACCTTGTGTTTACAACAGGCGTCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 880 TATAAAGAAGGCAGGCCATTTGGTACAATTGGAAAGACCTTGTGTTTACAATAGGCGTCT 939
Query 900 CAAAAAGTTTCTTGCATCTATTCACTCTGAAGATAAA 936
||||||||||||||||||||||||||| |||||||||
Sbjct 940 CAAAAAGTTTCTTGCATCTATTCACTCGGAAGATAAA 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5