BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888409
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:1... 1391 0.0
AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 285 5e-76
> AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17243583-17245296
FORWARD LENGTH=1362
Length=1362
Score = 1391 bits (753), Expect = 0.0
Identities = 863/917 (94%), Gaps = 4/917 (0%)
Strand=Plus/Plus
Query 1 ATGGACTTGTCTGTACTTGATAGGCTTAAATGGCTGCAACAGCAGCAAATGGTTTCACCT 60
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 117 ATGGACTTGTCTGTACTTGATAGGCTTAAGTGGCTGCAACAGCAACAAATGGTTTCACCT 176
Query 61 GAGTTTCTTCAGATACTTGGCTCAGATGGGAGAGAAGAGCTCAAAAGAGCTGAGAGTTAC 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 177 GAGTTTCTTCAGATACTTGGCTCAGATGGGAGAGAAGAGCTCAAAAGAGTTGAGAGTTAC 236
Query 121 TTGGGAAACAACAATGATGAGCTGCAGAGTTTCAGACATTTTCCCGAGTTTGGACCGGAT 180
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 237 TTGGGAAACAACAATGATGAGCTGCAGAGTTTCAGACATTTTCCCGAATTCGGACCGGAT 296
Query 181 TATGATGCTACTGATGGCTGCATTTCTAGGACAAGTAGCTTCCAAATGGAGCCAGTGAAG 240
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 297 TATGATACTACTGATGGCTGCATTTCTAGGACAAGTAGCTTCCATATGGAGCCAGTGAAG 356
Query 241 AACAATGGACATAACAGAGCCATTGCCTTGCATAACaagagaaaaccagagggtaagaca 300
|| |||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 357 AATAATGGACACAGCAGAGCCATTACCTTGCAGAACAAGAGAAAACCAGAGGGTAAGACA 416
Query 301 gaaaagagagagaagaagaagatcaaagcagaggatgaaacagagtcaagcatgaaagga 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 417 GAAAAGAGAGAGAAGAAGAAGATCAAAGCAGAGGATGAAACAGAGCCAAGCATGAAAGGG 476
Query 361 aaaaCAAACATGAGCAACACAGAGACATCTTCAGAGATTCAGAAACCAGATTACATCCAT 420
||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 477 AAATCAAACATGAGTAACACAGAGACATCTTCAGAAATTCAGAAACCAGATTACATTCAT 536
Query 421 GTCAGAGCTAGACGTGGTGAAGCTACCGACAGACATAGCTTAGCAGAGAGGGCAAGGAGA 480
|| || |||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 537 GTTAGGGCTAGACGAGGTGAAGCCACCGACAGACATAGCTTAGCAGAGAGGGCAAGAAGA 596
Query 481 GAAAAGATAAGCAAGAAGATGAAATGTCTTCAAGATATTGTTCCTGGATGCAACAAAGTA 540
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 597 GAAAAGATAAGCAAGAAGATGAAATGTCTACAAGATATTGTTCCTGGATGCAACAAAGTT 656
Query 541 ACTGGGAAAGCTGGTATGCTTGATGAGATCATCAACTATGTCCAATCTCTGCAACAACAA 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACTGGAAAAGCTGGTATGCTTGATGAGATCATCAACTATGTCCAATCTCTGCAACAACAA 716
Query 601 GTCGAGTTCTTATCGATGAAACTCTCTGTCATAAATCCAGAACTTGAGTGTCATATCGAT 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTCGAGTTCTTGTCGATGAAACTCTCTGTCATAAATCCAGAACTTGAGTGTCATATCGAT 776
Query 661 GATTTATCCGCAAAACAGTTTCAGGCTTACTTCACTGGTCTTCCCGAAGCTGACTCGAAG 720
||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||
Sbjct 777 GATTTATCCGCAAAACAGTTTCAGGCTTACTTCACAGGTCCTCCAGAAGGTGACTCGAAG 836
Query 721 CAGTCAATCATGGCGGATTTTCGGTCTTTTCCATTACATCAGCAAGGATCTATAGATTAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 837 CAGTCAATCATGGCGGATTTTCGGTCTTTTCCATTACATCAGCAAGGATCTTTAGATTAC 896
Query 781 TCAGTCTTGAACGGCACTGTA-ACAATC-TCTCTCTGTTCAAAAGATCAGACATCTTCAA 838
|||||| | ||| || | || | | |||||| | | |||||||| ||||| ||||
Sbjct 897 TCAGTCATAAACT-CAGACCACACCA-CATCTCTCGGCGCTAAAGATCATACATCATCAA 954
Query 839 GCTGGGAAACTCACTCACAATGTCTTTACAACAGCTTAAGAACCGATTCCGTTTCAAATT 898
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 955 GCTGGGAAACTCACTCACAGTGTCTTTACAACAGCTTGAGAACCGATTCTGTTTCCAATT 1014
Query 899 TCTTCAGCCTCAAGTAA 915
|||||||||||||||||
Sbjct 1015 TCTTCAGCCTCAAGTAA 1031
> AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7952442-7954739 REVERSE LENGTH=1492
Length=1492
Score = 285 bits (154), Expect = 5e-76
Identities = 380/481 (79%), Gaps = 47/481 (10%)
Strand=Plus/Plus
Query 255 CAGAGCCATTGCCTTGCATAACaagagaaaaccagagggtaagac-a--gaaaag--aga 309
||||||| |||||||| | ||||||||||||||||||| |||||| | ||| || | |
Sbjct 641 CAGAGCCGTTGCCTTGAAGAACAAGAGAAAACCAGAGGTTAAGACAAGGGAAGAGCAAAA 700
Query 310 gaga-agaagaagatcaaagcagaggatgaaacagagtcaagcatgaaagg--aa--aaa 364
|| | ||||||||||||||| ||||| ||| |||||||||||||||||||| || |||
Sbjct 701 GACAGAGAAGAAGATCAAAGTAGAGGCTGAGACAGAGTCAAGCATGAAAGGAAAATCAAA 760
Query 365 C-----AAACA-TG-AG------CA-ACA---C--A-GAGACAT---------CTTCAGA 395
| ||||| || || || ||| | | ||||||| |||||||
Sbjct 761 CATGGGAAACACTGAAGCATCTTCAGACACTTCAAAGGAGACATCGAAAGGAGCTTCAGA 820
Query 396 GATTCAGAAACCAGATTACATCCATGTCAGAGCTAGACGTGGTGAAGCTACCGACAGACA 455
|| ||||||| |||||| ||||| || |||||| | || || |||| || ||||||||
Sbjct 821 GAATCAGAAATTAGATTATATCCACGTGAGAGCTCGTCGAGGCCAAGCCACTGACAGACA 880
Query 456 TAGCTTAGCAGAGAGGGCAAGGAGAGAAAAGATAAGCAAGAAGATGAAATGTCTTCAAGA 515
||||||||||| ||||| || ||||||||||| |||||||| ||||||| ||| |||||
Sbjct 881 CAGCTTAGCAGAAAGGGCGAGAAGAGAAAAGATCAGCAAGAAAATGAAATATCTGCAAGA 940
Query 516 TATTGTTCCTGGATGCAACAAAGTAACTGGGAAAGCTGGTATGCTTGATGAGATCATCAA 575
|||||| ||||||||||| || || || || |||||||||||||||||||||||||||||
Sbjct 941 TATTGTGCCTGGATGCAATAAGGTCACAGGAAAAGCTGGTATGCTTGATGAGATCATCAA 1000
Query 576 CTATGTCCAATCTCTGCAACA-ACAAGTCGAGTTCTTATCGATGAAACTCT-CTGTCATA 633
||||| |||| ||| ||| | ||||||||||||| | ||||||||||| | ||||| |
Sbjct 1001 TTATGTTCAATGTCTCCAA-AGACAAGTCGAGTTCCTGTCGATGAAACT-TGCTGTCTTG 1058
Query 634 AATCCAGAACTTGAG-T-GTCATATCGATGATTTATCCGCAAAACAGTTTCAGGCTTACT 691
|| || ||||| ||| | | | | || ||| |||||| ||||||||||||||||||||
Sbjct 1059 AACCCGGAACTAGAGCTTGCCGTG--GAAGATGTATCCGTAAAACAGTTTCAGGCTTACT 1116
Query 692 T 692
|
Sbjct 1117 T 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5