BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888414

Length=876
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21790.1 | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide ...  95.3    9e-19


> AT2G21790.1 | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide 
reductase 1 | chr2:9293270-9297842 FORWARD LENGTH=2972
Length=2972

 Score = 95.3 bits (51),  Expect = 9e-19
 Identities = 68/76 (89%), Gaps = 2/76 (3%)
 Strand=Plus/Plus

Query  9     TAATGGTATTGTTCC-AGTGCTTCGGGTATTCAATGCTACTGCTAGTTATGTTGACCAAG  67
             ||||||||||||||| | |||| || |||||||| | ||| ||| |||||||||||||||
Sbjct  1066  TAATGGTATTGTTCCTA-TGCTGCGTGTATTCAACGATACAGCTCGTTATGTTGACCAAG  1124

Query  68    GAGGAGGCAAGAGAAA  83
             ||||||||||||||||
Sbjct  1125  GAGGAGGCAAGAGAAA  1140



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42749259097


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5