BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888419
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1443 0.0
AT4G36510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 87.9 2e-16
> AT4G36440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 41 Blast
hits to 41 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:17206858-17210007
REVERSE LENGTH=1674
Length=1674
Score = 1443 bits (781), Expect = 0.0
Identities = 850/883 (96%), Gaps = 5/883 (1%)
Strand=Plus/Plus
Query 340 AGTTATGACAAACTTGGACGTACAGCACAGGTCAATATTATTTGTGGGAACTGTAGCGAT 399
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 438 AGTTATGACAAACTTGGACGTACAGCACAGGTTAATATTATTTGTGGGAACTGTAGTGAT 497
Query 400 GGACGGTGTAAAGGTGGACTTGGATGCATATGTAGTGTCACCCAAGATTCAACTTGCAGA 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 498 GGACGGTGTAAAGGTGGACTTGGATGCATATGTAGTGTCACCCAAGATTCAACTTGTAGA 557
Query 460 GTTACTGTCGACTTGGCTATTCCATGTGAGAAACCTGGCCCTCTGGTGTTCAAGGG-TTT 518
|||||||||||||||||||||||||||||||||||||| || | |||||| ||||| |||
Sbjct 558 GTTACTGTCGACTTGGCTATTCCATGTGAGAAACCTGGTCCGCGGGTGTTTAAGGGATTT 617
Query 519 CACAGTCGGTTTGCATCCTCGCTCATGGGAAATAATTTATAATGGGATGACGCAGTTTGG 578
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 618 -ACAGTCGGTTTGCATCCTCGCTCATGGGAAATTATCTATAATGGGATGACACAGTTTGG 676
Query 579 ATTTGATAAACCTCGTCGTGAGTTTAGCTTCAAGACCGAGCAGACTCATCTTACTCTCTA 638
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 677 ATTTGATAAGCCCCGTCGTGAGTTTAGCTTCAAGACCGAGCAGACTCATCTCACTCTCTA 736
Query 639 TATGACTGCAATTGCTTCTCTTTCAACATTGGTAGGGAAGCCTATCATCAAGGTTTTCCC 698
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 737 TATGACTGCAATTGCTTCTCTTTCAACATTGGTAGGGAAGCCTATCATCAAGGTTTCCCC 796
Query 699 AGAGAATGGTCTTGATGTTAAGATAGCTGGTTCTTCCTTGACTGGGAATCATCCAACAAC 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGAGAATGGTCTTGATGTTAAGATAGCTGGTTCTTCCTTGACTGGGAATCATCCAACAAC 856
Query 759 TTTATCACCTTCAACTTTAGTACTAGATTGGAATTGTGAGAAATCTCGGCGAACTCCATA 818
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 857 TTTATCACCGTCAACTTTAGTACTGGATTGGAATTGTGAGAAATCTCGGCGAACTCCATA 916
Query 819 TGAAGTCAATGTCACCATCCCAGTGGATGGTTATGATCCTGTTCAGTTTTACCTCACAAA 878
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 917 TGAAGTCAATGTCACCATCCCAGTGGATGGTTATGATCCTGTTCAGTTTTTCCTTACAAA 976
Query 879 ACTCTGCGAATACAACCAAGGTAATGAAGGAGGATCAGCGAAAGGATGGGCTATATTTGG 938
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 977 ACTCTGCGAATACAATCAAGGTAACGAAGGAGGATCAGCGAAAGGATGGGCTATATTTGG 1036
Query 939 AGTTTTTTCCTGTGTATTCCTCGTCGCATCTGCACTTTTCTGCTGTGGAGGCTTTATTTA 998
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1037 AGTTTTTTCCTGCGTATTCCTCGTTGCATCTGCACTTTTCTGCTGTGGGGGCTTTATTTA 1096
Query 999 CAAAACAAGAGTAGAGCGAGTGCGTGGAATTGATGCATTACCGGGGATGTCACTTCTATC 1058
||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1097 TAAAACAAGAGTAGAGCGTGTGCGTGGAACTGATGCATTGCCGGGGATGTCACTTCTATC 1156
Query 1059 GGGCTTACTAGAAACTGTGAGTGGAAGTGGACAAAGCTACTCAAGAACTGAAGACATCAA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 GGGCTTACTAGAAACTGTGAGTGGAAGTGGACAAAGCTACTCAAGAACTGAAGACATCAA 1216
Query 1119 CAATGCTTTTGCCAATGAAGTCTCATGGGACCGCTCTTCCGCATCTTCTACTCCAGCGAC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1217 CAATGCTTTTGCCAATGAAGTCTCATGGGACCGCTCTTCCGCATCTTCTACTCAAGCGAC 1276
Query 1179 AACA-CA--GAGACCAAGTGAAAGAACATATGGTGCGATCTAA 1218
|||| || ||||||||||||||||||||||||||||||||||
Sbjct 1277 AACAACACAGAGACCAAGTGAAAGAACATATGGTGCGATCTAA 1319
Score = 483 bits (261), Expect = 2e-135
Identities = 289/303 (95%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 1 ATGCAGATACCATCAAGAGACCACAGTTTCATTCTATTTCTCTTCATCTCTGCTTTTGTA 60
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 135 ATGCAGATACCATCAAGAGAGCATAGTTTCATTCTATTTCTCTTCATATCTGCTTTTGTA 194
Query 61 ATTGGTGCTGCGTCTGTACCTGTCCCTGATTCTAATTGCTACGCTCTTGACAATTCAAGT 120
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 195 ATTGGTGCTGCGTCTGTACCTGTACCTGATTCTAATTGCTACGCTCTCGACAATTCAAGT 254
Query 121 CGTCTTGTCGATTTCAGCAGCTGGATCGGCCATCCATTTGAATATGATGGGAAGGAATTT 180
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 255 CGTCTTGTCGATTTTAGCAGCTGGATCGGTCATCCATTTGAATATGATGGCAAGGAATTT 314
Query 181 GATTTGGTGGTTAGATTCTGCAAGGATGTGGAAACAAGAGGGCAGATGGGATATGTTGAT 240
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 315 GATTTGGTGGTTAGATTTTGCAAGGATGTGGAAACAAGAGGGCAGGCGGGATATGTTGAT 374
Query 241 TTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGGAAATTTCGATTTTGTT 300
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 375 TTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGAAAATTTCGATTTCGTG 434
Query 301 CAA 303
|||
Sbjct 435 CAA 437
> AT4G36510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 2 Blast hits to 2
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:17228777-17229451 FORWARD LENGTH=465
Length=465
Score = 87.9 bits (47), Expect = 2e-16
Identities = 47/47 (100%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 1075 GTGAGTGGAAGTGGACAAAGCTACTCAAGAACTGAAGACATCAACAA 1121
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GTGAGTGGAAGTGGACAAAGCTACTCAAGAACTGAAGACATCAACAA 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5