BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888441
Length=2997
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36140.1 | Symbols: | disease resistance protein (TIR-NBS-L... 2876 0.0
> AT4G36140.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr4:17098956-17104479 REVERSE LENGTH=4824
Length=4824
Score = 2876 bits (1557), Expect = 0.0
Identities = 2526/2989 (85%), Gaps = 86/2989 (3%)
Strand=Plus/Plus
Query 1 ATGGATTTCCGTCGGAAATGCATTGATGCATTTGTGAATTGCAATGAAATTCCGGATGTA 60
|||||||| || |||||| | ||| ||||||||| |||| || ||| | || ||||||
Sbjct 1366 ATGGATTTTCGCCGGAAAGGAATTTCTGCATTTGTAAATTACAGTGAGACTCTGGATGTG 1425
Query 61 ATAGATAGAGTTAGCGCTTCCGTGGTGATTTTCTCCAAGAGCTGCTTCTCCTCTACCTCA 120
|| || |||||||||||||||||| || ||||||| ||||||||| ||||||| ||||||
Sbjct 1426 ATTGAGAGAGTTAGCGCTTCCGTGCTGGTTTTCTCAAAGAGCTGCGTCTCCTCCACCTCA 1485
Query 121 TGCCTAGACAAGCTCGTGAGGATTC-TTCAGTGCCAGAGGAAAACCGGCCAGCTGGTGGT 179
||||| |||| |||||||||| || ||||||| | ||||||||||||||||||||||||
Sbjct 1486 TGCCTGGACATGCTCGTGAGG-GTCTTTCAGTGTCGGAGGAAAACCGGCCAGCTGGTGGT 1544
Query 180 TCCAGTAT-TCTACGGCATTAGTCCATCAAATTTGGTGGTGCAGGAGCATGAGTCAGCGG 238
||| || | | || ||||||||| ||||| || |||||||||||||||| |||||| ||
Sbjct 1545 TCCTGTGTAT-TATGGCATTAGTTCATCAGATGTGGTGGTGCAGGAGCACAAGTCAGTGG 1603
Query 239 ATCGGGTAAGAGAATGGAGTAGCGCGCTCCAAGAACTGAAAGCATTACCAGCCCACCAGT 298
| ||| ||||||||||||||||||| ||||||||||||| || |||||||| ||||||
Sbjct 1604 ACCGGATAAGAGAATGGAGTAGCGCACTCCAAGAACTGAGAGAATTACCAGGCCACCACA 1663
Query 299 ATAGGGAGGAATGTAGCGAGTGGGAACTTGTGGAAGAGATTGTCAAAGATGTGTATGA-A 357
||||||||||||| || ||| | |||||||||||||||||||||||||||||| |||| |
Sbjct 1664 ATAGGGAGGAATGCAGTGAGAGCGAACTTGTGGAAGAGATTGTCAAAGATGTGCATGAGA 1723
Query 358 AAGTTCTTTCCCACGCAACAAATTGGAATCAACACGAGGGTGATGGAGATAGAACAATTG 417
|| ||||||||||| ||||||| ||||||||| ||||| || ||||||| ||||| |||
Sbjct 1724 AA-CTCTTTCCCACGGAACAAATCGGAATCAACTCGAGGCTGCTGGAGATGGAACATTTG 1782
Query 418 CTTTGCAAGCAACCATGGGGTATTCGTCGCATAGGAATTTGGGGTATGTCTGGCATAGGC 477
||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||
Sbjct 1783 CTTTGCAAGCAACCATGGGGTGTCCGTCGCATAGGAATTTGGGGTATGCCCGGCATAGGC 1842
Query 478 AAGACGACACTTGCTAAAACAGTTTTTGACCAAATCTCTGGAGGCTATGAAGCTTCTTGT 537
|| || |||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 1843 AAAACTACACTTGCTAAAGCATTTTTTGACCAAATCTCTGGTGGCTATGAAGCTTCTTGT 1902
Query 538 TTTATCAAAAACTTTGACATGGCTTTTCA-TGAGAAGGGGCTTCACCGTTTGTTGGAGGA 596
|| |||||| ||||||||| ||||||| | || ||||||||||||||||||| |||||||
Sbjct 1903 TTCATCAAACACTTTGACAAGGCTTTT-AGTGGGAAGGGGCTTCACCGTTTGCTGGAGGA 1961
Query 597 GCATTTTGGGAATATTCTGAAGGAATTGCCTCGTGAATCCAGTAGCATTATGAGACCTAG 656
||||||||||| ||| |||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1962 ACATTTTGGGAAAATTTTGAAGGAATTGCCTCGTGTATGCAGTAGCATTACGAGACCTAG 2021
Query 657 CCT-CCC-GGGAGAAAAGTTAAGAAAGATTAGAACT-TTCGTTGTTCTTGATGATGTGCA 713
||| ||| |||| ||| ||||| |||| |||||| || ||||||||||||||||||||
Sbjct 2022 CCTCCCCAGGGA-CAAA-TTAAGCAAGAAGAGAACTCTT-GTTGTTCTTGATGATGTGCA 2078
Query 714 CAATTCTTTGGTTGCTGAATCTTTTCTCGGAGGGTTCCATTGGTTTGGCCCGGGAAGCCT 773
|||| |||||||||| || |||||||||| |||||| |||||||| ||||||||||||||
Sbjct 2079 CAATCCTTTGGTTGCCGAGTCTTTTCTCGAAGGGTTTCATTGGTTCGGCCCGGGAAGCCT 2138
Query 774 GATAATCATAACCTCCAGAGATAAACAAGTTTTCCGCCATTT-TCAGATCAATCATGTGT 832
|| |||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 2139 AATCATCATAACGTCCAGAGATAAACAAGTGTTCCGCC-TTTGTCAGATCAATCATGTGT 2197
Query 833 ATGAGGTCCAAAGCTTAAATGAGAATGAGGCTCTGCAGCTGTTCTCTCAGTGTGCATTTG 892
||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2198 ATGAGGTTCAGAGCTTTAATGAGAATGAGGCTCTGCAGCTGTTCTCTCAGTGTGCTTTTA 2257
Query 893 GTAA-ACATATAAGA-GAACAAAATCTCCTGGAACTTTCAAAGGAAGTGATTGACTATGC 950
| || | |||||| | ||||||||||| |||||||| ||| | ||||||||||||||||
Sbjct 2258 G-AAGAGATATAA-ATGAACAAAATCTGCTGGAACTATCACTGAAAGTGATTGACTATGC 2315
Query 951 TAATGGAAATCCATTAGCTCTCAGATGTTACGGCAGAGAGCTTAAGGGAAAGAAACTATC 1010
|| ||||||||||||||||||||| | |||| |||||| ||||||||||||| |||| ||
Sbjct 2316 TAGTGGAAATCCATTAGCTCTCAGCTTTTACTGCAGAGTGCTTAAGGGAAAGGAACTTTC 2375
Query 1011 AGAAATTGAGACCACATTCCTCAAACTCAAGTTACGTACTCCAAATGAGATTCATGATTT 1070
|||||| ||||| |||||| |||||||||| ||| |||||| || ||||| ||||||
Sbjct 2376 AGAAATGGAGACTACATTCTTCAAACTCAAACAACGAACTCCATATAAGATTTTTGATTT 2435
Query 1071 GTTCAAGAGCAGCTACGAAGCACTTAATGACAATGAGAAGAACATTTTTCTGGACATTGC 1130
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2436 GTTCAAGAGCAGCTACGAAACACTTGATGACAACGAGAAGAACATTTTTCTGGACATTGC 2495
Query 1131 TTGTTTCTTCGAG-GGAGAAAATGTTGATTATGTGATACAACTGCTTGAGGGGTGTGGtt 1189
|||||||||| || |||||||||||||| |||||||| | ||| ||||||||||||||||
Sbjct 2496 TTGTTTCTTC-AGTGGAGAAAATGTTGACTATGTGATGCGACTACTTGAGGGGTGTGGTT 2554
Query 1190 tttttCCACATGTTGGGATTGGTGTTCTTGTGGAGAAGTGTCTGATGACTATTTCAGAAA 1249
||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct 2555 TTTTTCCACATGTTGGGATTGATGTTCTTGTGGAGAACTGTCTGGTGACTATTTCAGAAA 2614
Query 1250 ACAGAGTGAAAATGCACAGAATAATCCAAGACTTTGGCCGAGAAATAAGCAATGGCCAAA 1309
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||
Sbjct 2615 ACAGAGTGAAAATGCATAGAATAATCCAAGACTTTGGCCGAGAAATAATCGATGGAGAAA 2674
Query 1310 CAGTACAGATAGAGAGGTGTCGCAGACTGTGGGAACCTAGGACCATCAGATTCCTACTTG 1369
|||||||||| |||||| |||||||||||| || ||| ||| ||||| |||||| ||||
Sbjct 2675 CAGTACAGATCGAGAGGCGTCGCAGACTGTCAGATCCTTGGAGCATCAAATTCCTTCTTG 2734
Query 1370 AAGATGCCAAACTCGAAACATATGGAGATCCCAAAGCTACCTATACACATGCTCTGGGGA 1429
|||||| | |||||||| || ||| |||||||||||| || ||||| | | ||||||| |
Sbjct 2735 AAGATGACGAACTCGAAGCAAATGAAGATCCCAAAGCAACATATACTCGTACTCTGGGCA 2794
Query 1430 CTGAAGACATTGAAGGCATATTTCTGGACATATCAAACTTGATATTTGATGTGAAGCCTG 1489
||||||| || ||||||||| ||||||||| ||| ||||| | |||||||||||||||||
Sbjct 2795 CTGAAGATATCGAAGGCATACTTCTGGACACATCGAACTTAACATTTGATGTGAAGCCTG 2854
Query 1490 GTGCTTTTGAAAATATGCTAAGCCTTAGATACCTGAAGATTT-TCTGTTCCAGTTATG-A 1547
|||| ||||| ||||||||||||||||||| ||||||||||| | ||||||||||||| |
Sbjct 2855 GTGCCTTTGAGAATATGCTAAGCCTTAGATTCCTGAAGATTTAT-TGTTCCAGTTATGAA 2913
Query 1548 AACCTATTTTGGACTCCGCCTTCCAAAAGGACTTGAGTCTCTGCCTTATGAGCTAAGACT 1607
|||| ||| | | ||||||||||| ||||||||| ||| ||||||| |||||||||||||
Sbjct 2914 AACC-ATTATAGCCTCCGCCTTCCGAAAGGACTTAAGTTTCTGCCTGATGAGCTAAGACT 2972
Query 1608 CCTCCACTGGGTGAACTATCCTTTACAATCCTTGCCACAAGAATTTGACCCATGTCACCT 1667
||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 2973 CCTCCACTGGGAGAACTATCCTTTGCAATCCTTGCCACAAGACTTTGATCCATGCCACCT 3032
Query 1668 TGTTGAACTCAATCTGTCTTATAGTCAGCTTCATAAACTTTGGGGAGGAACTAAGAACCT 1727
||||||||||||||| ||||| ||||||||||| |||||||||| |||||| |||| |||
Sbjct 3033 TGTTGAACTCAATCTCTCTTACAGTCAGCTTCAGAAACTTTGGGCAGGAACCAAGAGCCT 3092
Query 1728 CGAGATGCTGAAGATGGTCAGGCTTTGTCATTCCCAGCAGCTAAATGAGATTAATGATAT 1787
||||||||||||| |||||| ||||||||||||||| ||||| | || |||| | |||||
Sbjct 3093 CGAGATGCTGAAGGTGGTCAAGCTTTGTCATTCCCAACAGCTTACTGCGATTGACGATAT 3152
Query 1788 TGGT-AAAGCTCAAAATATCGAGCTAATAGATCTCCAGGGGTGTTCAAAACTGCAGAGTT 1846
| | ||||||||||||||||||||||| |||||||| || ||| |||| ||||||| |
Sbjct 3153 T-TTAAAAGCTCAAAATATCGAGCTAATTGATCTCCAAGGCTGTAGAAAATTGCAGAGGT 3211
Query 1847 TTCCAGCCATGGGTCAATTACAGCATCTACGAGTTGTAAACCTTTCAGGTTGCACTGAGA 1906
||||||||| |||||||||||| ||||| ||||||||||| || |||||||| | ||||
Sbjct 3212 TTCCAGCCACGGGTCAATTACAACATCTCCGAGTTGTAAATCTCTCAGGTTGTAGAGAGA 3271
Query 1907 TTAGAAGCTTT-CCAGAGGTTTCACCAAATATTGAGGAACTACATCTCCAGGGAACTGGC 1965
| | ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3272 TCAAAAG-TTTCCCAGAAGTTTCACCAAATATTGAGGAACTACATCTCCAGGGAACTGGC 3330
Query 1966 ATCAGAGAACTACCAATATCCACTGTGAACCTCTCCCCGCATGTTAAGCTGAACCGAGAG 2025
|| |||||| |||||||||||| |||| ||||| | || | |||| |||| ||||||
Sbjct 3331 ATAAGAGAATTACCAATATCCATTGTGTCCCTCTTCGAACAAGCTAAGTTGAATCGAGAG 3390
Query 2026 CTTT-CGAATTTTCTAACAGAATTCCCAGGGGTTTCAGATGCTTTGAACCATGAGCGATT 2084
|||| | ||| | ||| |||||||| |||| |||||| |||||| |||| |||||| ||
Sbjct 3391 CTTTTC-AATCTCCTACCAGAATTCTCAGGTGTTTCAAATGCTTGGAACAATGAGCAATC 3449
Query 2085 ACCAAGCGTGGTTGAAGCAGTCTTATCTTA-TCACCATCTTGGTAAACTTGTTTGCCTGA 2143
| ||||| ||| || |||| ||| | ||| ||||||| ||||||||||||||||
Sbjct 3450 AACAAGCCTGGCCAAATTAGTCACGTCT-ACTCAAAATCTTGGCAAACTTGTTTGCCTGA 3508
Query 2144 ATATGAAAGATTGTGTCCATTTGAGAAGTCTTCCTCAAATGGCTGACTTAGAATCTCTGA 2203
|||||||||||||||| |||||| ||| || ||| | |||| ||| || |||||||| |
Sbjct 3509 ATATGAAAGATTGTGTTCATTTGCGAAAACTGCCTTACATGGTTGATTTCGAATCTCTTA 3568
Query 2204 AAGTTCTTAATCTGTCTGGATGCTCAGAGCTCGACGATATTCAGGGTTTCCCACGAAACC 2263
|||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||| |
Sbjct 3569 AAGTTCTTAATCTGTCTGGATGCTCAGATCTCGACGATATTGAGGGTTTCCCGCCAAATC 3628
Query 2264 TGAAAGAGTTATATATTGGTGGCACCGC-TGTaaaaaaaCTTCCACAACTTCCCCAGAGT 2322
|||||||||||||| ||| | |||| || | ||||| |||||||||| |||||||| |||
Sbjct 3629 TGAAAGAGTTATATCTTGTTAGCACTGCCT-TAAAAGAACTTCCACAGCTTCCCCAAAGT 3687
Query 2323 CTAGAAGTCTTGAATGCACATGGCTGTGTGTCACTCAAAGCAATTCCTTTTGGTTTCAAT 2382
||||||||||||||||||||||| |||||||| || | ||||||||| ||| |
Sbjct 3688 CTAGAAGTCTTGAATGCACATGGTTGTGTGTCTCTTTTATCAATTCCTTCCAATTTTGAG 3747
Query 2383 CACCTTCCTAGGTATTACACATTCAGTGGTTG-TTCTGCTCTTTCACCACAA-GTGATCA 2440
| |||||||||||||||||||||||| ||| || ||||||||| || | ||| |||
Sbjct 3748 CGGCTTCCTAGGTATTACACATTCAGTAATTGCTT-TGCTCTTTCTGCA-AGCGTGGTCA 3805
Query 2441 CAA-AATTTTTAGCAA-AA-GCTCTGGCTGATGTAGAAGGCATAGCAAGAGAGTTTAAGC 2497
| ||||| || || || |||||| || |||||| | ||| || |||||| || |
Sbjct 3806 -ATGAATTTGTA--AAGAACGCTCTGACTAATGTAGCACACATCGCGAGAGAGA--AA-C 3859
Query 2498 AGGAACTCAACGAATCTCTGGCTTTCAGCTTCAGTGTGCCTTCACCTGCAACTAAAAA-A 2556
||||||||||| ||||| ||||| ||| ||| | |||||||||||||| || |||||| |
Sbjct 3860 AGGAACTCAACAAATCTTTGGCTCTCAACTTTACTGTGCCTTCACCTGAAAGTAAAAATA 3919
Query 2557 CCCACACTTAATCTGCCAGCAGGATCTTCTGCAA-CGATGCGACTGGATCCTTCTTCTAT 2615
| ||| || |||||| | |||| ||||| | | | || | ||||| | | |||| ||
Sbjct 3920 TC-ACATTTGATCTGCAACCAGGGTCTTCCGTGATC-ATACAACTGGGT--T-CTTC-AT 3973
Query 2616 A-AGCACGC-TCCTG-GGCTTTGTTATATTTATT-GAAGTTGCAATTTCGGATGATTACG 2671
|| || | | | | || |||| ||| |||| | ||||||||| ||| ||| || |||
Sbjct 3974 GGAG-ACTCATTC-GCGGTTTTGCTAT-TTTAGTCGAAGTTGCATTTTTGGAGGAATACC 4030
Query 2672 ATGAGGCTATTGGTTTTGGTGTTAGGTGTGTTCGGAGATGGAAAGACAAGGAAGGCGTCT 2731
| | | || || |||| | |||| |||||| | ||||||||||||| ||| | || |
Sbjct 4031 A-G-G-CTGGTGCTTTTAGCATTAGTTGTGTTTGCAGATGGAAAGACACTGAATGTGTAT 4087
Query 2732 CT-AGAAGTCTAGAAAAAA-CTTTTCATTGTTGGACTCCAGGGGAAGGTTTTCACAAGTT 2789
|| | | | || ||||||| ||| |||||||||| ||||||||||||| ||| |
Sbjct 4088 CTCATAGG-CTGGAAAAAAACTTC-CATTGTTGGATTCCAGGGGAAGGTGTTC-C----- 4139
Query 2790 TCAAAAGGATCATTTGTTTGTCTTCTGTGATCTCAATTTGCATGC-GTTTTC-TGGTAAA 2847
||| |||||| ||||||||||||||||| || || ||||| | | | | || | ||
Sbjct 4140 -CAA--GGATCACATGTTTGTCTTCTGTGATTTCGATATGCAT-CTGACTGCCTG-TGAA 4194
Query 2848 GGAGAGGAC-CCAGATATATTCGCTGGGCTGGTTGTATTTGATTTCTTTCCCGTCAACAA 2906
||| | ||| |||| |||||| |||| || || |||||||| |||||| | || |||||
Sbjct 4195 GGAAATGACTCCAG-TATATTGGCTGATCTTGTCGTATTTGAATTCTTTACTGTGAACAA 4253
Query 2907 TCAGGAGAAGCTTCTAGATGGGAGCTGTACGGTGAAGAGTTGTGGAGTC 2955
||| | ||||||||||||||||| ||| | |||| ||| |||||||||
Sbjct 4254 GCAGAAAAAGCTTCTAGATGGGAGTTGTGCAGTGACGAGATGTGGAGTC 4302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148995820710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5