BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888459
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35985.1 | Symbols: | Senescence/dehydration-associated pro... 2037 0.0
AT4G35980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 379 4e-104
> AT4G35985.1 | Symbols: | Senescence/dehydration-associated protein-related
| chr4:17032268-17033862 REVERSE LENGTH=1347
Length=1347
Score = 2037 bits (1103), Expect = 0.0
Identities = 1267/1346 (94%), Gaps = 12/1346 (1%)
Strand=Plus/Plus
Query 1 ATGGAATGCTCTGCAACTCGTCCCAAGCTTTACCCAACCGTCGACACATCAACCACCGTT 60
||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGAATGCTCTGCAACTCCTCCCAAGCTTTATCCAACCGTCGACACTTCAACCACCGTT 60
Query 61 GCTCCTCTCCCTAATTCCTC-T--TCCTCCTCTTGTAC---TAATAATAATCTCTATCCG 114
|||||||||||||| ||||| | |||||||||| ||| ||||||||||||||||||
Sbjct 61 GCTCCTCTCCCTAAGTCCTCTTCCTCCTCCTCTTCTACTAATAATAATAATCTCTATCCT 120
Query 115 TCCATCGATGTGAATGATCTTGTCAACAATATCTTCCCGGATCCCACCGCTTCTGACTCA 174
|| ||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 121 TCAATCAATGTCAATGATCTTGTCAACAATATCTTCCCCGATCCCACCGCCTCTGACTCA 180
Query 175 GCTTCAGCTCCTCC-CATGGCGACGGAGGAAGTGATTCTGACAATCCACGGTGCGATGCT 233
|||||||| ||||| | | |||||||||||||||||||| ||||||||||| |||||| |
Sbjct 181 GCTTCAGCGCCTCCTC-TCGCGACGGAGGAAGTGATTCTCACAATCCACGGCGCGATGGT 239
Query 234 CCACCTGATCGACAAATCCTACAGCGTGGAGCTCGCTTGCGGCGATCTCGAGATTCTCCG 293
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 CCACCTCATTGACAAATCCTACAGCGTAGAGCTCGCTTGCGGCGATCTCGAGATTCTCCG 299
Query 294 TCTTGTTCAAGGAGATATCACCGTGGCGGTTTTCGCGCGCGTCACTGATGAGATCCAATG 353
|||||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||
Sbjct 300 TCTTGTTCAAGGAGATATCACCGTCGCGGTTTTCGCTCGCGTCGGTGACGAGATCCAATG 359
Query 354 GCCGTTGACTAAAGACGAACCCGCCGTTAAAGTCGATGAGTCTCATTACTTCTTCTCGCT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCCGTTGACTAAAGACGAACCCGCCGTTAAAGTCGATGAGTCTCATTACTTCTTCTCGCT 419
Query 414 CCGACCCGTTAAAGAATCCGGGTCGTCGGATCATTCAATCAACGAAGCAGAGAACGAGAT 473
|||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||||||
Sbjct 420 CCGACCCGTTAAAGAATCCGAGTCATCGGATCATTCAGTCAACGAAACAGAGAACGAGAT 479
Query 474 GTTGAACTACGGATTAACAATCGCTTCCAAAGGTCAAGAACCGTTGCTGGAGAAGCTAGA 533
||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||
Sbjct 480 GTTGAACTACGGATTAACAATGGCTTCGAAAGGTCAAGAACCGATGCTTGAGAAGCTAGA 539
Query 534 CAAGATCTTAGCGGACTACAGCAGTTTCACGGCGGAGGAGAATCAGAAAGAAGAGAACGT 593
|||||||||||| || ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 540 CAAGATCTTAGCTGATTACAGTAGTTTCACAGCGGAGGAGAAACAGAAAGAAGAGAACGT 599
Query 594 TTTGGATTTGACGGCGGCGAAGGAGACTTCACCGGAGGAGCTGAAGGGAAAGAGGAAAAA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTGGATTTGACGGCGGCGAAGGAGACTTCACCGGAGGAGCTGAAGGGAAAGAGGAAAAA 659
Query 654 GTTGGTGGAGAAGCAATGTACGGCTTATTGGACGACTCTGGCTCCGAATGTTGAGGATTA 713
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATGGTGGAGAAGCAGTGTACGGCTTATTGGACGACTCTGGCTCCGAATGTTGAGGATTA 719
Query 714 CAGTGGCGTTGCAGCGAAACTGATCGCTGCCGGTTCTGGTCAATTGATAAAAGGGATCTT 773
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 720 CAGTGGCGTTGCAGCGAAACTGATCGCTGCTGGTTCTGGTCAATTGATTAAAGGGATCTT 779
Query 774 ATGGTGTGGTGATCTCACAATGGATAGGCTCATGTGGGGAAATGATTTCATGAAGAAGAA 833
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 ATGGTGTGGGGATCTCACAATGGATAGACTCATGTGGGGAAATGATTTCATGAAGAAGAA 839
Query 834 GTTGTCTAAAGCAGAGAAAGAGAGACAAGTTAGTCCTGGAACTTTGAAACGTCTCAAAAG 893
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTTGTCCAAAGCAGAGAAGGAGAGACAAGTTAGTCCTGGAACTTTGAAACGTCTCAAAAG 899
Query 894 AGTGAAGAAGATGACAAAAATGACAGAGAAAGTGGCTAATGGTGTGCTCTCTGGTGTTGT 953
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 AGTAAAGAAGATGACAAAAATGACAGAGAAAGTGGCGAATGGTGTGCTCTCTGGTGTTGT 959
Query 954 TAAAGTTTCTGGATTCTTTTCGAGTTCAGTGATAAACAGCAAAGCTGGGCAGAAACTCTT 1013
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 TAAAGTTTCTGGATTCTTCTCGAGTTCAGTGATAAATAGCAAAGCTGGGCAGAAACTCTT 1019
Query 1014 TGGTCTTCTTCCTGGAGAAATGGTTCTTGCAACACTTGATGGATTCAACAAGGTTTGTGA 1073
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGGCTTCTTCCTGGAGAAATGGTTCTTGCAACACTTGATGGATTCAACAAGGTTTGTGA 1079
Query 1074 TGCTGTTGAAGTAGCGGGAAGGA-ACGTTATGAAAACATCTTCC-ACTGTCGCTACCGAA 1131
|||||| |||||||| ||||| | |||||||||||||| |||| | ||| |||| |||
Sbjct 1080 TGCTGTCGAAGTAGCAGGAAG-ACACGTTATGAAAACAACTTCAGA-TGTAACTACTGAA 1137
Query 1132 ATCGTCGATCACAAGTATGGAGCAAAGACAGCACAGGCGACAAATGAAGGGCTTAGCGCA 1191
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1138 ATCGTCGATCACAAGTATGGAGCAAAGACAGCACAAGCGACAAACGAAGGGCTTAGCGCA 1197
Query 1192 GCAGGGCATGCTATTGGAACGGCGTGGACCGTTTTCAAGATCAGACAAGCTCTTAACCCC 1251
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1198 GCAGGGCATGCTTTTGGAACGGCGTGGACTGTTTTCAAGATTAGACAAGCTCTTAACCCC 1257
Query 1252 AAGAGTGCCATGAAGCCATCATCACTCGCTAAAACCGCAATTAAAACGGCAGCTAAAGAG 1311
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1258 AAGAGTGCCATGAAGCCATCATCACTCGCTAAAACCGTAGTTAAAACGGCAGCTAAAGAG 1317
Query 1312 AAAAAGAAGGGGAAAAAGACTTCTAA 1337
| ||||||||||||||| | ||||||
Sbjct 1318 AGAAAGAAGGGGAAAAAAAGTTCTAA 1343
> AT4G35980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr4:17030572-17031696 REVERSE LENGTH=618
Length=618
Score = 379 bits (205), Expect = 4e-104
Identities = 235/249 (94%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 1375 GTTGATGAGAAGAAGCAAGCTGCTGCTGATGTGTTGTTTAGTTATTCCAAGTTTGCAATG 1434
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GTTGATGAGCAGAAGCAAGCTGCTGCTGATGTGTTGTTTAGTTATTCCAAGTTTGCAATG 188
Query 1435 GCCTGCATCGGTAACCAGACTCGTCCTACTGACATGAGGTTGCATTTGATGAAGGAGATC 1494
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GCCTGCATTGGTAACCATACTCGTCCTACTGACATGAGGTTGCATTTGATGAAGGAGATC 248
Query 1495 TCTGGATTGCCAACTTCTCTGAAAAGAAGAGAATCTTCCAGAGCTGCAACTTCTCCCGAT 1554
|||||| ||||||||||||||||| ||||||| ||||| ||||| || |||||| |||
Sbjct 249 TCTGGAATGCCAACTTCTCTGAAAGGAAGAGACTCTTCTAGAGCAGC---TTCTCCTGAT 305
Query 1555 CCAGTTGGCGAATCATCAAGCTCTGGTACTGCCAGGCTAGATAAAACGGATAGTTTCAGG 1614
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 306 CCACTTGGCGAATCATCAAGCTCCGGTACTGCCAGGCTAGATAAAACGGATAGTTTCAGG 365
Query 1615 GCACTTTGA 1623
|||||||||
Sbjct 366 GCACTTTGA 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5