BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888463
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35930.1 | Symbols: | F-box family protein | chr4:17018929-... 1129 0.0
> AT4G35930.1 | Symbols: | F-box family protein | chr4:17018929-17021060
FORWARD LENGTH=1561
Length=1561
Score = 1129 bits (611), Expect = 0.0
Identities = 732/789 (93%), Gaps = 14/789 (2%)
Strand=Plus/Plus
Query 131 CTAAGTCATGTAATGATTTGGGGAAGAAACGAGTACCTGTATTTGATACTAAGCATGCAA 190
||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 458 CTAAGTCCTGCAATGATTTGGGGAAGAAACGAGTACCTGTATTTGATATTAAGCATGCGA 517
Query 191 GGAACAAGAAAATGGCGGCT-GAGCATTTGAATTCTCCCAAAAGCCCTCTAATGTTGTCC 249
||||||| |||||||| | | || || ||||||||||| ||||||||||| |||||||||
Sbjct 518 GGAACAATAAAATGGCAG-TGGAACAGTTGAATTCTCCAAAAAGCCCTCTTATGTTGTCC 576
Query 250 CCTGTCAACGTTGTTAAGCGTAGTACTCTGGTGAGGCCAATGAAG-TT--TGA--TG-A- 302
|||||||||||||||||||| |||||||||||||||||||||||| || ||| || |
Sbjct 577 CCTGTCAACGTTGTTAAGCGGAGTACTCTGGTGAGGCCAATGAAGTTTGATGATCTGCAG 636
Query 303 -T----AGTAATAACAGTTGTAAGAAAAGCCCTTTAATGTTATCTCCAATGGGTATTGTT 357
| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 637 GTGGAGAGTAATAATACTTGTAAGAAAAGCCCTTTAATGTTATCCCCAATGGGTATTGTT 696
Query 358 ATGCAAAACACTTTGGTGAGGACACCAAAAACTCCCCAAGCTGATCCTTGCAATTCAGAA 417
|||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 697 ATGCAAAACACTCTGTTGAGGACACCAAAAACTCCCCAAGCTGATCCTTGCGTTTCAGAA 756
Query 418 TCTCAGCTTGAATCTCTTCCCATGGATTTACTGGTTAAAATAGTTTGTCATCTGCACCAT 477
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TCACAGCTTGAGTCTCTTCCCATGGATTTACTGGTTAAAATAGTTTGTCATCTGCACCAT 816
Query 478 GACCAGCTGAAGGCAGTTTTCCATGTTTCTCAAAGAATAAGAATGGCTACCATTCTTGCA 537
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 817 GACCAGCTGAAGGCTGTTTTCCATGTTTCTCAAAGAATAAGAATGGCCACCATACTTGCA 876
Query 538 AGACAATATCATTTTAATTATACAACGCCAGATCGCTCAAGACAGGAAATGTTGAGTGTC 597
|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 877 AGACAATATCATTTCAATTATACAACACCAGACCGCTCAAGACAGGAAATGTTGAGGGTC 936
Query 598 ATGACCCCAATGCCAATAAATCGTTGGCCATTCCGTAGAGGAGATGGAAACCCAACAATG 657
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 937 ATGACCCCAGTTCCAATAAATCGTTGGCCATTTCGTAGAGGAGATGGAAACCCAACAATG 996
Query 658 GTGTCAAGCCCACATACCCCAAAAGCGCCAAAACATGCACCTCGTCCACCCTATAGAACC 717
|||||||||||||||||||| ||||| ||||||||||| ||| | ||||||| | |||||
Sbjct 997 GTGTCAAGCCCACATACCCCCAAAGCACCAAAACATGCTCCTAGACCACCCTCTCGAACC 1056
Query 718 AAACTCGCAGAGATGAAGCAAATCACTGCTGTTCTTTTCCAAGACCAGACACCGTTTCCT 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1057 AAACTCGCGGAGATGAAGCAAATCACTGCTGTTCTTTTCCAAGACCAGACACCATTTCCT 1116
Query 778 TCAAGGTGCATCGTTCCTTCTGTTCTCCAAAGGCCGACTTTGTTCAAACCAATGGCTCCA 837
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1117 TCAAGATGCATCGTTCCTTCTGTTCTCCAGAGGCCGACTTTGTTCAAACCAATGGCTCCA 1176
Query 838 AAGCACCCTCGAGTGCTCTTCTATGAGGATGAATTATGTCAAGCTGTTGCTCAAAACAAC 897
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1177 AAGCACCCTCGAGTGCTCTTCTATGAGGATGAACTATGTCAAGCTGTTGCTCAAAACAAC 1236
Query 898 CTTACCTGA 906
|| ||||||
Sbjct 1237 CTCACCTGA 1245
Score = 279 bits (151), Expect = 2e-74
Identities = 178/191 (93%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAAGGTGTCTCCAAAAGACTTGGATTCTAAAACCTCGGTGAGGAAAAAGAAGTTG 60
||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 280 ATGGGGAAGGTATCTCCAAAGGATTTGGATTCAAAAACCTCGGTGAGGAAAAAGAAGTTG 339
Query 61 AAAGGTTCAGGTAACAAATATTTAAAGCCAGGGGCTTTGGTTCAGCTTTGTTATAGCAAA 120
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 340 AAAAGTTCAAGTAACAAGTATTTAAAGCCAGGGGCTTTGGTTCAGCTTTGTTACAGCAAA 399
Query 121 GCATCGGCTGCTAAGTCATGTAATGATTTGGGGAAGAAACGAGTACCTGTATTTGATACT 180
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 400 GCATCGGCTGCTAAGTCATGTAATGAATTAGGGAAGAAACGAGTACCTGTGTTTGATACT 459
Query 181 AAG-CATGCAA 190
||| | |||||
Sbjct 460 AAGTCCTGCAA 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5