BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888467
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35900.1 | Symbols: FD, FD-1, atbzip14 | Basic-leucine zippe... 1271 0.0
AT2G17770.2 | Symbols: BZIP27 | basic region/leucine zipper mot... 235 5e-61
AT3G56850.1 | Symbols: AREB3, DPBF3 | ABA-responsive element bi... 82.4 7e-15
> AT4G35900.1 | Symbols: FD, FD-1, atbzip14 | Basic-leucine zipper
(bZIP) transcription factor family protein | chr4:17004595-17006287
FORWARD LENGTH=1344
Length=1344
Score = 1271 bits (688), Expect = 0.0
Identities = 805/860 (94%), Gaps = 13/860 (2%)
Strand=Plus/Plus
Query 1 ATGTTGTCATCAGCAAAGCATCAGAGAAACCATAGAGTCTCTGCTACAAACAAGAACCAG 60
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 152 ATGTTGTCATCAGCTAAGCATCAGAGAAACCATAGACTCTCTGCTACAAACAAGAACCAG 211
Query 61 ACTCTCAACAGAGTTTCTTCcatttcatcctcatcaccatcg------tc-t--tcatca 111
||||||| || ||||||||||||||||||||||||||||||| || | ||||||
Sbjct 212 ACTCTCACCAAAGTTTCTTCCATTTCATCCTCATCACCATCGTCTTCTTCTTCATCATCA 271
Query 112 tcaacctcatcatcatcTCCTTTACCTTCACAAGACTCTCACGCCCAGAAGAGATCTCTA 171
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 272 TCAACCTCATCATCATCTCCTTTACCTTCTCAAGACTCTCAAGCCCAGAAGAGATCTCTT 331
Query 172 ATCACCATGGAAGAGGTTTGGAAAGACATCAACCTTGCTTCCATCCACCACCTAAACCGA 231
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 332 GTCACCATGGAAGAAGTTTGGAATGACATCAACCTTGCTTCCATCCACCACCTAAACCGA 391
Query 232 CACAGCCCACATCCTCAACACAACCATGAGCCAAGGTTCAGGAGCCACAACCATCAGAAC 291
|||||||| ||||| ||||||||||| ||||||||||||||| |||| ||||| || |||
Sbjct 392 CACAGCCCTCATCCACAACACAACCACGAGCCAAGGTTCAGGGGCCAAAACCACCACAAC 451
Query 292 CAAAACCCTAACTCAATCTTCCAAGATTTTCTCAACGGATCTTTGAACCAGGAACCAGCA 351
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 452 CAAAACCCTAACTCAATCTTCCAAGATTTTCTCAAAGGATCTTTGAACCAGGAACCAGCA 511
Query 352 CCCACAAGCTTGACCACGGGTTCTGCGCCTAATGGTGATTCCACCGCTGTCACTGCTCTC 411
||||||||| |||||||||||||||||||||||| ||||||||| | ||||||| |||
Sbjct 512 CCCACAAGCCAGACCACGGGTTCTGCGCCTAATGGCGATTCCACCACGGTCACTGTTCTT 571
Query 412 TGCAGCTCTCCTTTTCCACCTCCAGCAACTGTCCTGAGCTTGAATTCTGGCGCTGGCTTC 471
| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 572 TACAGCTCTCCTTTTCCACCTCCTGCAACTGTTCTGAGCTTGAATTCCGGCGCTGGCTTC 631
Query 472 GAGTTTCTCGATAACCAAGATCCTCTTGTTACCTCAAACTCTAATCTTCATAGCCACCAT 531
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 632 GAGTTTCTCGATAACCAAGATCCTCTTGTTACCTCAAACTCTAATCTTCATACCCACCAT 691
Query 532 CACCTCTCAAACGTTCAAT-CCTTCAACACAC-CTTTTGAGGCTCTGGTTCCGTCCACTT 589
||||||||||||| || || |||||||||| | |||| |||||||||||||| |||| ||
Sbjct 692 CACCTCTCAAACGCTC-ATGCCTTCAACAC-CTCTTTCGAGGCTCTGGTTCCATCCAGTT 749
Query 590 GTTTTGGTAAGAAAAGAGGCCAAGAGTCCAATGAAGGTTCAGGGAATCGAAGACATAAGC 649
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 750 CTTTTGGTAAGAAAAGAGGCCAAGATTCCAATGAAGGTTCAGGGAATAGAAGACATAAGC 809
Query 650 GTATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGAGCTAGGAAACAGGCTTATACAA 709
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 810 GTATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGCGCTAGGAAACAGGCTTATACAA 869
Query 710 ACGAGTTAGAACTTGAAGTTGCTCACCTGCAGGCAGAAAATGCAAGACTCAAGAGACAAC 769
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 870 ACGAGTTAGAACTTGAAGTTGCTCACTTGCAGGCAGAAAATGCAAGACTCAAGAGACAAC 929
Query 770 AGGATCAGTTGAGAATGGCTGCAGCAATTCAGCAACCCAAAAAGAACACACTTCAACGGT 829
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AAGATCAGTTAAAAATGGCTGCAGCAATTCAGCAACCCAAAAAGAACACACTTCAACGGT 989
Query 830 CTTCCACAGCTCCATTTTGA 849
||||||||||||||||||||
Sbjct 990 CTTCCACAGCTCCATTTTGA 1009
> AT2G17770.2 | Symbols: BZIP27 | basic region/leucine zipper motif
27 | chr2:7723103-7724323 FORWARD LENGTH=960
Length=960
Score = 235 bits (127), Expect = 5e-61
Identities = 224/269 (83%), Gaps = 14/269 (5%)
Strand=Plus/Plus
Query 588 TTGTTTTGGTAAGAAAAGAGGCCAAGAGTCCAATGAAGGTTC-AG-GGA-ATC-GAAGAC 643
|||| |||||||||||||||||||||| | | ||| | | | || ||| | | ||||
Sbjct 327 TTGTCTTGGTAAGAAAAGAGGCCAAGA-TTC--TGATGATACTAGAGGAGA-CAGAAGGT 382
Query 644 ATAAGCGTATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGAGCTAGGAAACAGGCTT 703
||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||| |
Sbjct 383 ATAAGCGTATGATCAAGAACAGAGAATCTGCTGCTCGTTCAAGGGCTAGGAAGCAGGCAT 442
Query 704 ATACAAACGAG-TTAGAACTTGAAGTTGCTCACCTGCAGGCAGAAAATGCAAGACTCAAG 762
|||||||||| || || |||||| |||||||| ||||| |||| |||||||||||||||
Sbjct 443 ATACAAACGAACTT-GAGCTTGAAATTGCTCACTTGCAGACAGAGAATGCAAGACTCAAG 501
Query 763 AGACAACAGGATCAGTTGAGAATGGCTGCAGCAATTCAGCAACCCAA--AAAGAACACAC 820
| |||||| || ||| ||| ||| || | ||||| ||| |||| || |||||| ||||
Sbjct 502 ATACAACAAGAGCAGCTGAAAATAGCCGAAGCAACTCAA-AACC-AAGTAAAGAAAACAC 559
Query 821 TTCAACGGTCTTCCACAGCTCCATTTTGA 849
| |||||||||||||||||||||||||||
Sbjct 560 TACAACGGTCTTCCACAGCTCCATTTTGA 588
> AT3G56850.1 | Symbols: AREB3, DPBF3 | ABA-responsive element
binding protein 3 | chr3:21046341-21048516 REVERSE LENGTH=1729
Length=1729
Score = 82.4 bits (44), Expect = 7e-15
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 652 ATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGAGCTAGGAAACAGGCTTA 704
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1316 ATGATAAAGAACAGAGAGTCTGCTGCTCGTTCCCGAGCTAGGAAACAGGCTTA 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5