BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888473

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   350    1e-95


> AT4G35850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr4:16983525-16986967 FORWARD LENGTH=1734
Length=1734

 Score =  350 bits (189),  Expect = 1e-95
 Identities = 199/204 (98%), Gaps = 0/204 (0%)
 Strand=Plus/Plus

Query  455   AAATGAATGAACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAG  514
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1174  AAATGAACGAACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAG  1233

Query  515   CCGCTGGTGAAAAGACGGGAGGGTACATAGTTGCAAATATGATATGGGATCTGATGCTAG  574
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1234  CCGCTGGTGAAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAG  1293

Query  575   TTCGGAATATTCTACCAACACTAGCTGCTGTTGAAGCTTATTACAAGGGCTTGAAAGAAC  634
              ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1294  CTCGGAATATTCTACCAACACTAGCTGCTGTTGAAGCTTACTACAAGGGCTTGAAAGAAC  1353

Query  635   GTGAAATACCAGAGGATGATCCGA  658
             | ||||||||||||||||||||||
Sbjct  1354  GCGAAATACCAGAGGATGATCCGA  1377


 Score =  257 bits (139),  Expect = 8e-68
 Identities = 141/142 (99%), Gaps = 0/142 (0%)
 Strand=Plus/Plus

Query  106  AAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAGCAATTGATTCATCAAGGAAG  165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  723  AAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAGCAATTGATTCATCAAGGAAG  782

Query  166  AGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGCTGTACAATATTCCAACCGCT  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  783  AGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGCTGTACAATATTCCAACCGCT  842

Query  226  GATTATGCCCACAGGACCAGGT  247
            |||||| |||||||||||||||
Sbjct  843  GATTATTCCCACAGGACCAGGT  864


 Score =  233 bits (126),  Expect = 1e-60
 Identities = 148/159 (93%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  244   AGGTGCTATCTACACTCGGAAGACTTTGAGAATGGTCTCAAATTGTTTGAAGATTACATG  303
             |||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct  1008  AGGTGCTATCTACATTCGCAAGACTTTGAGAATGGTCTCAAACTGTTTCAAGATTACATG  1067

Query  304   AGCGCAGATAAAATCCCTGCCATGGAATTCTACACGACGCCTATAGAAGGACCTATGACA  363
             |||||||| |||||||||||||||||| | |||||||||| |||||||||| ||||||||
Sbjct  1068  AGCGCAGACAAAATCCCTGCCATGGAACTATACACGACGCTTATAGAAGGAGCTATGACA  1127

Query  364   GGACACACCGATAATGGAATGAAGATTGCTCAAGACACT  402
             ||| |||||||||||||||||||||||||||| ||||||
Sbjct  1128  GGATACACCGATAATGGAATGAAGATTGCTCAGGACACT  1166



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32652195550


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5