BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888480
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35820.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 907 0.0
> AT4G35820.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:16971221-16972429
FORWARD LENGTH=819
Length=819
Score = 907 bits (491), Expect = 0.0
Identities = 541/566 (96%), Gaps = 0/566 (0%)
Strand=Plus/Plus
Query 127 GTTGCTGCATCGTTGCGCTTTCCAAGTGAGCGTTGGCTCGAAGTCATAGCGAAGGAGCCT 186
|||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 226 GTTGCTGCTTCGTTACGCTTTCCAAACGAGCGTTGGCTCGAAGTCATAACGAAGGAGCCT 285
Query 187 AGAGCTTTCGTTTACCATAATTTCTTGGCTCTCTTCTTTAAATTTTGTAAGACAAACGAA 246
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 286 AGAGCTTTTGTTTACCATAATTTCTTGGCTCTCTTCTTTAAAATTTGTAAGACAAACGAA 345
Query 247 GAATGTGAACACTTGATTAGCCTCGCGAAACCTAGTATGGCGAGGTCCAAGGTGCGCAAT 306
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GAATGTGATCACTTGATTAGCCTCGCGAAACCTAGTATGGCGAGGTCCAAGGTGCGCAAT 405
Query 307 GCGATAACCGGACTGGGTGAAGAAAGCAGCTCACGGACGAGTTCAGGAACTTTTCTTAGA 366
||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 406 GCGTTAACTGGACTTGGTGAAGAAAGCAGCTCACGGACGAGTTCAGGAACTTTTATTAGA 465
Query 367 AAAGGACATGACAAAATCGTGAAAGAGATTGAGAAAAGGATTTCAGAATTCACCTTCATT 426
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 466 AGTGGACATGACAAAATCGTCAAAGAGATTGAGAAAAGGATTTCAGAATTCACCTTCATT 525
Query 427 CCTGAAGAAAACGGAGAAGCGCTTCAAGTGATCCATTATGAAGTTGGGCAGAAATTTGAG 486
||| |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||
Sbjct 526 CCTCAAGAAAACGGAGAAACGCTTCAAGTTATCAATTATGAAGTTGGGCAGAAATTTGAG 585
Query 487 CCTCACTTTGACGGATTTCAAAGAATTGCTACTGTTCTTATGTATCTCTCGGACGTTGAT 546
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 586 CCTCACTTTGACGGATTTCAAAGAATTGCTACGGTTCTTATGTATCTCTCGGATGTTGAT 645
Query 547 AAAGGCGGCGAAACAGTGTTCCCTGAAGCCAAAGGAATTAAAAGTAAAAAAGGAGTCTCT 606
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AAAGGCGGCGAAACAGTTTTCCCTGAAGCCAAAGGAATTAAAAGTAAAAAAGGAGTCTCT 705
Query 607 GTTAGACCGAAGAAGGGAGACGCTTTACTCTTTTGGAGCATGAGACCTGACGGGTCTCAA 666
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 706 GTTAGACCGAAGAAGGGAGACGCTTTACTCTTTTGGAGCATGAGACCCGACGGGTCTCGA 765
Query 667 GACCCGTCGAGTAAGCATGGTAagag 692
||||| ||||||||||||||||||||
Sbjct 766 GACCCTTCGAGTAAGCATGGTAAGAG 791
Score = 215 bits (116), Expect = 5e-55
Identities = 124/128 (97%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAAGTCGACGTCACTGTCTACCATACTGTATCTGAGGCAGAGGTTGCACGGGCTG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTAAGTCGACGTCAGTGTCTACCATACTGTATCTGAGGCAGAGGTTGCAGGGGCTG 60
Query 61 AAGATATATGAAACTTCAGATCTAATGCAGCACATCAACACGTTCGATGCATTAGTCGGT 120
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 61 AAGATATATGAAACTTCAGATCTAATACAGCACATCAACACGTTCGATGAATTAGTCGGT 120
Query 121 GAACAAGT 128
||||||||
Sbjct 121 GAACAAGT 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5